Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25k12
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36238-6|CAA85279.2|  337|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF024494-10|AAB70336.1|  642|Caenorhabditis elegans Hypothetical...    30   1.9  
AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical ...    29   4.3  
U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine rece...    28   5.7  
U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z36238-6|CAA85279.2|  337|Caenorhabditis elegans Hypothetical
           protein R74.7 protein.
          Length = 337

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 555 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFA 659
           R R   KL++ID +F + + V   +DLC  PG ++
Sbjct: 22  RARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWS 56


>Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical
           protein C54E10.1 protein.
          Length = 872

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 522 RSKLFDKRPTRRPRCWRKLLEIDK--KFHVCRHV 617
           R K+F KRP R   C  KLLE+ K  K H+ R +
Sbjct: 477 RFKIFIKRPERGDVCASKLLEVMKMEKLHILRSI 510


>AF024494-10|AAB70336.1|  642|Caenorhabditis elegans Hypothetical
           protein C38C3.7 protein.
          Length = 642

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
 Frame = +2

Query: 143 WRELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTKT-LTMYNERI--RAALN 313
           W  +I+++ N+ P      T+F++  FE+ +     +++++  T  T+ N +I  R AL+
Sbjct: 311 WISIIVSIDNSEPPSPQKFTVFKRMGFEDCETVEDFIWHVENSTKKTVKNAKIERRLALH 370

Query: 314 RPAR-FND---QTTNVNIAYV 364
           + +R F D   +   VN+ Y+
Sbjct: 371 KVSRKFKDAVSRKAKVNLEYL 391


>AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical
           protein ZK250.2 protein.
          Length = 209

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 168 PTTHRLTTRLEQCFKKPILKISTTIHRLC 254
           PTTH  T   E+    P++++ST   ++C
Sbjct: 54  PTTHAETGMTEEMMTTPVVEVSTVTEKVC 82


>U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 16 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 284 YNERIRAALNRPARFNDQTTNVNIAYVFLFFICIVLLNVLVVFSDTNRTTDTK 442
           YN  +  A++ P         +NI Y+F FF+ I+ L +L V    N+  +++
Sbjct: 169 YNSPVITAISPPKGVE---IRLNILYIFCFFLAILALILLQVVRFVNKRRESR 218


>U00065-9|AAA50738.2| 1009|Caenorhabditis elegans Hypothetical
           protein D1044.6 protein.
          Length = 1009

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +2

Query: 182 LDNTFRTMFQKADFENFDYNT---PIVYNLKTKTLTMYNERIRAALNRPARFNDQTTNVN 352
           +D +   +F+ +D E F   T   P   +LK + L   +ERI   L    RF+  T  V 
Sbjct: 10  IDPSLADLFRNSDKEPFPAMTHELPPEKSLKARLLEQEDERISNVLAHEKRFS--TEPVV 67

Query: 353 IAYVFLFFICI 385
           I  VF+  +C+
Sbjct: 68  IDDVFMSRLCV 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,710,004
Number of Sequences: 27780
Number of extensions: 351505
Number of successful extensions: 999
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)