Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25k07
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    28   1.00 
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.3  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    27   2.3  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    26   5.3  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    25   7.0  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.0  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   9.3  
SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   9.3  

>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 627 FFNDTFKHL*NKSIDIILKAVVPSL 553
           F ND F HL  +++DIIL  + P+L
Sbjct: 429 FNNDYFVHLVEENVDIILPIIYPAL 453


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 156 WEKMLRNLNYLRHCFRVSGIRFKSSNVEINENEPVKFSTSRAASRGPVPLISKINDDMPW 335
           +E + +N  +  + +R S      +N   N+    +   SRA SR P   IS+ +D  P 
Sbjct: 179 FESLHKNHKHYENSYRPSR---SQNNSHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPP 235

Query: 336 YQPY 347
           Y  Y
Sbjct: 236 YHSY 239


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 379 YIFVF*GKKVTLTGNSTKHFMIGLKG*KKNNSSN--HTDTTKNMVKV 513
           +IF F G+ +TL     K F+  L G   +NS     TD  K++V V
Sbjct: 82  HIFQFDGQYITLNSEFRKQFITALTGGGNHNSFGVPCTDEDKHLVTV 128


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 240 INENEPVKFSTSRAASRGPVPLISKINDD 326
           INENEP  F+     SR    + SK+ DD
Sbjct: 212 INENEPYNFTHYLLLSRTYTEIESKLMDD 240


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 633 LTFFNDTFKHL*NKSIDIILKAVVPSLPS 547
           L  +N +F H+  +S+D++   V P+LP+
Sbjct: 414 LNLYNASFGHVVLRSLDVLTILVPPALPA 442


>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 381 YFCVLREESDIDREFDKTLYDRIKGLEKE 467
           Y CV++   D+  +FD+ + +++  L K+
Sbjct: 57  YVCVIKTHIDVVEDFDQDMVEKLVALGKK 85


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 330 PWYQPYVVIGSVAIFMLYFCV-LREESDIDREFDKTLYDRIKGLEKEQL 473
           P+ Q +V I       +YF V LR    I   FD    ++I GLE+  L
Sbjct: 312 PFGQTFVEIEDPFCSFVYFYVSLRVPCSIQLFFDSVPLEKINGLEQRAL 360


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/55 (21%), Positives = 23/55 (41%)
 Frame = +3

Query: 219 FKSSNVEINENEPVKFSTSRAASRGPVPLISKINDDMPWYQPYVVIGSVAIFMLY 383
           F SSN   +  +     T+ + +  P P   +   +  +Y PY  +G   ++  Y
Sbjct: 404 FTSSNATYSGEQKTYSPTTLSTNAPPSPSSGRSCSNCNYYYPYTPVGYYPVYNRY 458


>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 327 MPWYQPYVVIGSVAIFMLYFCVLREESDIDREFDK 431
           +PW + Y+ +   A+++    VL E+  +DR+ +K
Sbjct: 88  IPWKRAYLYVKRPALYIPGETVLVEQVYVDRQLEK 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,859
Number of Sequences: 5004
Number of extensions: 43273
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)