Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25k07
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469...    30   1.4  
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988...    30   1.8  
01_05_0473 - 22549178-22549532,22549612-22550576                       27   9.6  

>04_04_1323 +
           32644956-32645096,32645488-32646126,32646701-32646907,
           32647020-32647100,32647686-32648566,32648641-32648932,
           32649657-32650673,32651334-32651605,32651992-32652493
          Length = 1343

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 345 YVVIGSVAIFMLY-FCVLREESDIDREFDKTLYDRIKGLEKEQL 473
           Y+ IG + + ++   C L +  + D +FD   Y  IKG+EK++L
Sbjct: 289 YINIGRLPVMVMSNLCWLHKLKESDCQFDSGGYFLIKGMEKDEL 332


>04_03_0588 +
           17595299-17596151,17597519-17597665,17598562-17598837,
           17599108-17599805
          Length = 657

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 384 FCVLREESDIDREFDKTLYDRIKGLEKEQLLQS 482
           F + ++ SDI R+  K  + + KGL  EQL+ S
Sbjct: 354 FLIRKQRSDIQRQLRKKYFQKNKGLLLEQLISS 386


>01_05_0473 - 22549178-22549532,22549612-22550576
          Length = 439

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 213 IRFKSSNVEINENEPVKFSTSR--AASRGPVPLISKINDDM 329
           +RFKS ++   EN+   F TS   A+S   + ++  +NDD+
Sbjct: 202 VRFKSDDLNNEENQESFFKTSELVASSTMSLVVVELVNDDI 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,880,979
Number of Sequences: 37544
Number of extensions: 227664
Number of successful extensions: 470
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)