Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25j21
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    77   9e-16
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   0.93 
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   0.93 
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    25   3.8  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    25   3.8  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    25   5.0  

>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 77.4 bits (182), Expect = 9e-16
 Identities = 36/77 (46%), Positives = 53/77 (68%)
 Frame = +3

Query: 192 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNL 371
           VAA K  SK+EE++ P++Y++ RS  +  L+   K+ +PYPHKF V+I+L EFI KY+ L
Sbjct: 57  VAAPKSSSKKEEDLDPSQYFENRSRTIMELRQ-TKDPNPYPHKFQVTITLPEFIAKYEGL 115

Query: 372 NNGDVLENVTLSVAGRV 422
             G+    V ++VAGRV
Sbjct: 116 ARGETKPEVEVAVAGRV 132


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
 Frame = +3

Query: 186 PVVAAEKKPSKQEEE------ISPNEYYKLRSGAVAALKNGLKE 299
           P  A+  KPS+  EE      + PN++   R+G VAAL++ L++
Sbjct: 453 PTEASSTKPSEAAEESTPRFSVRPNKFTGSRAGFVAALESRLQK 496


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = +3

Query: 195 AAEKKPS-KQEEEISP-NEYYKLRSGAVAALKNGLK---EDHPYPHKFNVSISLEEFIEK 359
           A  K+P+ K  ++ S  ++Y  L SG +    +  +   E  PY +   V+ S+    + 
Sbjct: 448 AKNKQPATKLVQQASDFDQYVSLYSGYLQGFSDNFRPYVELLPYKNSRMVTHSIRFLEQS 507

Query: 360 YQNLNNGDVLENVTLSV 410
           Y N++NG V  N T  V
Sbjct: 508 YTNVSNGLVFVNTTTDV 524


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 96 NFLPWLSDLIHLT 58
          +F+PWL+D+ HLT
Sbjct: 6  HFVPWLTDIRHLT 18


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 285 NGLKEDHPYPHKFNVSISLEEFIEKYQNLNN 377
           NGL ++   P    VS + E  I+ Y+NLN+
Sbjct: 228 NGLSDNKSVPRVLVVSPTRELAIQTYENLNS 258


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 180 QQPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKE 299
           +QP+   E+  S+++EE +P  YY  R  A+  ++  +KE
Sbjct: 51  EQPMNTVEEVDSEEDEESAP-AYYPERE-AIQLIEKAIKE 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,153
Number of Sequences: 5004
Number of extensions: 25092
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)