Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25j21
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673...    64   6e-11
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677...    36   0.019
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85...    30   0.92 
11_06_0690 + 26303733-26306540                                         29   2.1  
03_05_0167 - 21448714-21448846,21449748-21449870,21450024-214503...    28   3.7  
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371     27   6.5  

>03_05_0168 -
           21466431-21466445,21467053-21467160,21467222-21467365,
           21467778-21467846,21467928-21468071,21468409-21468565,
           21468671-21468767,21469015-21469297,21469382-21469507,
           21470098-21470178,21471990-21472072,21472393-21472478,
           21473329-21473422,21473516-21473681,21473777-21473851,
           21474082-21474157,21474259-21474347
          Length = 630

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 31/74 (41%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
 Frame = +3

Query: 204 KKPSKQEEEISPNEYYKLRSGAVAALK-NGLKEDHPYPHKFNVSISLEEFIEKYQNLNNG 380
           K+ +  +EE+ P +YY+ R  A+ +LK  G+   +PYPHKF  +I++ ++IEKY+++N G
Sbjct: 68  KESAADDEEMDPTQYYENRLKALDSLKATGV---NPYPHKFLANITVADYIEKYKSMNVG 124

Query: 381 DVLENVTLSVAGRV 422
           D L +VT  +AGR+
Sbjct: 125 DKLVDVTECLAGRI 138


>02_05_0003 -
           24867053-24867145,24867264-24867437,24867673-24867735,
           24868108-24868198,24869579-24869673,24870471-24870668,
           24871475-24871648,24872335-24872439,24872645-24872737,
           24873688-24873690,24874776-24874844,24875208-24875265,
           24875810-24875918,24876603-24876714,24877992-24878204,
           24878214-24878546
          Length = 660

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 14/39 (35%), Positives = 27/39 (69%)
 Frame = +3

Query: 306 PYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRV 422
           PY +K++ + + +E  + Y +L NG+V  +V +S+AGR+
Sbjct: 122 PYAYKWDRTHTTKELQDGYTHLENGEVCADVAVSIAGRI 160


>03_01_0107 +
           849489-850652,850745-850835,850926-851083,851180-851231,
           852373-852452,852540-852633,852711-853231,854087-854202,
           854242-854293
          Length = 775

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 33  SCIFISILRLSELSPIAMAESSTEKISKNXXXXXXXXXXXXXXXXXXXSQQPV 191
           SC+F ++   SEL+P+  +E S  K  KN                   SQ+PV
Sbjct: 317 SCVFFTVNENSELAPVNSSEGSKSKHYKNSKVSTDPACVVIPHRTFALSQEPV 369


>11_06_0690 + 26303733-26306540
          Length = 935

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +3

Query: 216  KQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLEN 395
            +Q +++ P  Y   RS  +AA KNG K  H       V +    FIE     + GDVL  
Sbjct: 847  RQRQQVVP--YSPRRSNRLAA-KNGGKHIHSSTKAQRVVMKKLGFIEDENKADEGDVLRY 903

Query: 396  VTL 404
            V L
Sbjct: 904  VEL 906


>03_05_0167 -
           21448714-21448846,21449748-21449870,21450024-21450302,
           21450389-21450672,21450737-21450964,21452937-21453110,
           21453198-21453732,21453779-21453840,21453908-21454231,
           21454664-21455093,21457033-21457268,21457355-21457414,
           21457495-21457628,21457884-21458010,21458239-21458337,
           21458414-21458513,21458601-21458671,21459101-21459172,
           21459656-21459787,21460512-21460670
          Length = 1253

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 222 EEEISPNEYYKLRSGAVAALKNGLKEDH 305
           EE+++P +    R G+V   K  LK DH
Sbjct: 5   EEQVAPEQVISTRGGSVLGKKTILKSDH 32


>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
          Length = 437

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 204 KKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISL 341
           K+P++ E  ++  E YK     +  + NG+  D   PHKF+   SL
Sbjct: 384 KEPNQMEMFLALPEIYK--RDYIVQMLNGMLRDPQIPHKFHDCSSL 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,375,879
Number of Sequences: 37544
Number of extensions: 146869
Number of successful extensions: 314
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)