Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25j21
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna ...    64   5e-11
U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna ...    64   5e-11
U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna ...    56   1e-08
AF078781-1|AAC26915.2|  258|Caenorhabditis elegans Hypothetical ...    29   1.9  
AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    28   2.5  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    27   4.4  
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    27   7.7  

>U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform b protein.
          Length = 596

 Score = 63.7 bits (148), Expect = 5e-11
 Identities = 33/79 (41%), Positives = 48/79 (60%)
 Frame = +3

Query: 192 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNL 371
           VA   K  ++ +   P EY+ +R   + A +     D+P+PHKFNV+ISL +FI KY  L
Sbjct: 62  VADAPKVVREADPSDPQEYFNMRVRMIEARRAA--GDNPFPHKFNVTISLTDFITKYTPL 119

Query: 372 NNGDVLENVTLSVAGRVHS 428
               V+E + +SVAGR+HS
Sbjct: 120 EKEQVVEEI-VSVAGRIHS 137


>U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform a protein.
          Length = 572

 Score = 63.7 bits (148), Expect = 5e-11
 Identities = 33/79 (41%), Positives = 48/79 (60%)
 Frame = +3

Query: 192 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNL 371
           VA   K  ++ +   P EY+ +R   + A +     D+P+PHKFNV+ISL +FI KY  L
Sbjct: 38  VADAPKVVREADPSDPQEYFNMRVRMIEARRAA--GDNPFPHKFNVTISLTDFITKYTPL 95

Query: 372 NNGDVLENVTLSVAGRVHS 428
               V+E + +SVAGR+HS
Sbjct: 96  EKEQVVEEI-VSVAGRIHS 113


>U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform c protein.
          Length = 514

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 25/43 (58%), Positives = 33/43 (76%)
 Frame = +3

Query: 300 DHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRVHS 428
           D+P+PHKFNV+ISL +FI KY  L    V+E + +SVAGR+HS
Sbjct: 14  DNPFPHKFNVTISLTDFITKYTPLEKEQVVEEI-VSVAGRIHS 55


>AF078781-1|AAC26915.2|  258|Caenorhabditis elegans Hypothetical
           protein B0545.3 protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 247 YSLGLISSSCLDGFFSAATTGCCEA 173
           YS+G ++S+C +G F   +TG C A
Sbjct: 224 YSVGDVASACSEGTFGDPSTGLCVA 248


>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 183 QPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHP 308
           +P++++     + +E   PN  Y LR  AV + K   K D P
Sbjct: 363 KPLISSSLAEPENKENTKPNSPYSLRKRAVDSSKKPGKSDSP 404



 Score = 27.1 bits (57), Expect = 5.8
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 177 SQQPVVAAE--KKPSKQEEEISPNEYYKLRSGAVAA 278
           S  PVVA    +KP+K+ E+++P    K RS  VAA
Sbjct: 468 SGTPVVAQTVVQKPAKKSEKVTPKCQSKRRSETVAA 503


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 255  LRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNLNNGDVLE 392
            +R G   ++ NGL+E+  Y H   + +S     + YQ   + DV++
Sbjct: 1632 MRGGLGISVVNGLQEELIYAHFGGIVVSARRVDKTYQMTGSVDVIQ 1677


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 238 GLISSSCLDGFFSAATTGC 182
           G     CLDGF+  +T GC
Sbjct: 414 GRFCDQCLDGFYDFSTNGC 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,247,329
Number of Sequences: 27780
Number of extensions: 135611
Number of successful extensions: 407
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)