Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25j15
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.7  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   6.9  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   6.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 267 TIYASIVLKRKI*RWRFQLVNAHVCILQNKI 359
           T+   + LKR   +  FQ +N+ VC L +K+
Sbjct: 380 TLSTKLTLKRHKEQQHFQPLNSAVCALCHKV 410


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 77  RLRRKCEASPVRDRILSSPEP 139
           RLRR+ EA P  +R +  P+P
Sbjct: 115 RLRREPEAEPGNNRPVYIPQP 135



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 77  RLRRKCEASPVRDRILSSPEP 139
           RLRR+ EA P  +R +  P+P
Sbjct: 141 RLRREPEAEPGNNRPVYIPQP 161


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 113  DRILSSPEPVRLAKRWWRYKNHPGRSTRLQR 205
            DR+ S P P+ +++   R ++    ST+L R
Sbjct: 1392 DRLTSPPTPLSISRAGSRDEDSTRDSTKLDR 1422


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 506 GLFFAQPGILCVTPHSSHSI 447
           GL     G++CV   S HSI
Sbjct: 67  GLKLLSDGLMCVEKDSIHSI 86


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 519 LYRPRFIFCATRHFVRH 469
           +YRP  +   T+ F+RH
Sbjct: 6   VYRPTIVKKRTKKFIRH 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,441
Number of Sequences: 438
Number of extensions: 3562
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)