Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25j09
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    26   4.5  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 43  QTRSVVRLDLISGEFTLNCLNKSRR 117
           Q  S+++L   S  FTL C+N+S R
Sbjct: 181 QLHSIIKLPDRSSSFTLQCINESVR 205


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 620 VSTTYNMYNYSYAYLKFSHEQSGSLARSPHAGTQQSR 510
           V T Y+    S +  + + +Q+G  + S +AG QQS+
Sbjct: 154 VDTIYSPEESSESQAEVADQQTGPYSTSEYAGAQQSQ 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,854
Number of Sequences: 5004
Number of extensions: 41188
Number of successful extensions: 70
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)