Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25j09
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF068709-9|AAC19248.1|  349|Caenorhabditis elegans Seven tm rece...    29   3.2  

>Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical
           protein B0391.4 protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 605 NMYNYSYAYLKFSHEQSGSLARSPHAGTQQSRYTLYHSRQM 483
           N++NY  ++L +S E+S  L+ S       + YT +HS  M
Sbjct: 69  NVHNYKASFLFYSFEESFGLSGSWSRNIPLAGYTFFHSATM 109


>AF068709-9|AAC19248.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 13 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 605 NMYNYSYAYLKFSHEQSGSLARSPHAGTQQSRYTLYHSRQM 483
           N++NY  ++L +S E+S  L  S       + YT +HS  M
Sbjct: 69  NVHNYKASFLFYSFEESFGLRGSWSRNIPLAIYTFFHSATM 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,976,255
Number of Sequences: 27780
Number of extensions: 234609
Number of successful extensions: 449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)