Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25i06
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...   109   5e-25
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    28   1.4  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.2  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   5.5  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   5.5  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   7.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.3  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   7.3  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   9.6  

>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score =  109 bits (261), Expect = 5e-25
 Identities = 52/124 (41%), Positives = 80/124 (64%)
 Frame = +1

Query: 280 GEITKSVFMSQSTDIYTNLALEDWLYKNMDFTNHHVMMVWRNEPCVVIGRHQNPWLEANV 459
           G +   V + +S + Y NLALE++LY+N   T  H ++++ N P V+IGR+QNPW+EANV
Sbjct: 21  GLLQAKVVVCKSVNPYFNLALENYLYENS--TAKHCLLLYTNSPSVIIGRNQNPWVEANV 78

Query: 460 PLLSEKEIALARRNSGGGTVYHDRGNLNITFFAPRERYDRNYNLKLIKRALFRSFGIKST 639
            L  +  + + RR SGGGTV+HD GNLN +    RE +    N  ++ +AL R+ G+ + 
Sbjct: 79  KLCRDNFVNIIRRKSGGGTVFHDFGNLNYSVLMNREEFSHTENASIMIQAL-RNLGVHAR 137

Query: 640 INER 651
           +N+R
Sbjct: 138 LNQR 141


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = +1

Query: 259 ERVLPT-EG-EITKSVFMSQSTDIYTNLALED 348
           E  +PT  G EI +S+F+SQ+  ++ N++LED
Sbjct: 718 EAAIPTFRGLEIPESLFLSQNVFVFLNVSLED 749


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 99  NLDVKKTLTKQVKDGSSYGEKNSIQQCLHICWSCTENIYKK 221
           +L ++KT+T+ +   ++Y     +   LH+C     N+ KK
Sbjct: 266 DLLIRKTVTELIATLAAYNPDEFVSNYLHVCMLHLLNLLKK 306


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -1

Query: 194 PANVQALLDTILFTIA 147
           PAN+QALL+ I+F IA
Sbjct: 517 PANLQALLNRIIFIIA 532


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -2

Query: 271 EALSPFLMRPLCWMPQHFLYMFS-VQDQQMCKHCWILFFSP*LEPSF 134
           E+L  F   P+    Q   Y  S V+++     CW  F    ++PSF
Sbjct: 255 ESLKSFTTHPIYSFIQERKYFLSYVENRYQSLDCWNKFLEKEIDPSF 301


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 119 CLFYIEIISTLVKNKSFTKY 60
           C FY ++I T   +K+FT Y
Sbjct: 213 CSFYAQVIKTWYSDKNFTLY 232


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 492 CQSYFFFRK*WNIRLQPRILMSSNNHTWLISPHHHNMM 379
           C  + FFRK W +   PR  +   N   L S ++  +M
Sbjct: 39  CVFFCFFRKRWKVLYAPRTTIEGLNLPTLSSSYYKWLM 76


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 574 HISHVGQRMLYSDFLGHDK-QYHHHCYDVPKLFLFQKVVEHSPPAKDFDV 428
           H++    R +  DFLG D  +Y++     P++F   K+ +  PP K+ D+
Sbjct: 489 HVTLKPPRTVVFDFLGKDSIRYYNEVEVDPQVFKNLKIFKR-PPKKEGDL 537


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 189 CWSCTENIYKKCCGIQQSGRIKKGESASN*GG 284
           CW    N Y   CG++       GE+ +  GG
Sbjct: 278 CWVDAPNSYNAGCGVENPSGPSYGEAFNKNGG 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,806
Number of Sequences: 5004
Number of extensions: 59343
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)