Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25i06
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92780-3|CAB07178.2| 289|Caenorhabditis elegans Hypothetical pr... 117 8e-27
Z11115-18|CAI46594.1| 243|Caenorhabditis elegans Hypothetical p... 31 0.95
Z11115-17|CAA77455.3| 228|Caenorhabditis elegans Hypothetical p... 31 0.95
AY513235-1|AAS21678.1| 228|Caenorhabditis elegans thiamine pyro... 31 0.95
AF098996-2|AAC68711.3| 431|Caenorhabditis elegans Hypothetical ... 30 1.7
AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative RNA-... 29 3.8
AF063007-5|AAD47125.1| 712|Caenorhabditis elegans Prion-like-(q... 29 3.8
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 28 5.1
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 28 5.1
AF040649-3|AAK72087.1| 317|Caenorhabditis elegans Serpentine re... 27 8.9
>Z92780-3|CAB07178.2| 289|Caenorhabditis elegans Hypothetical
protein C45G3.3 protein.
Length = 289
Score = 117 bits (281), Expect = 8e-27
Identities = 53/120 (44%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Frame = +1
Query: 295 SVFMSQSTDIYTNLALEDWLYKNMDFT-NHHVMMVWRNEPCVVIGRHQNPWLEANVPLLS 471
+V S S+ I+ NLA E+ +++ + N ++++W N P VVIGRHQNPW+E N+P +
Sbjct: 11 TVLKSTSSCIFENLAYEEHIFRTHNVAQNGEILLMWSNRPAVVIGRHQNPWIEVNIPYAN 70
Query: 472 EKEIALARRNSGGGTVYHDRGNLNITFFAPRERYDRNYNLKLIKRALFRSFGIKSTINER 651
+ I + RR+SGGGTVYHD GNLNI+ ++ R NLK I AL + F +K N+R
Sbjct: 71 KNNIQIVRRHSGGGTVYHDLGNLNISLLTTHAQHCRPKNLKFISDALNQQFSVKIVPNKR 130
>Z11115-18|CAI46594.1| 243|Caenorhabditis elegans Hypothetical
protein ZK637.9b protein.
Length = 243
Score = 30.7 bits (66), Expect = 0.95
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 262 RVLPTEGEITKS-VFMSQSTDIYTNLALEDWLYK 360
+++ T E+T S VF+ S+ + ++ LE+W+YK
Sbjct: 206 KLISTSNEVTTSQVFLKSSSSLIFSIELENWVYK 239
>Z11115-17|CAA77455.3| 228|Caenorhabditis elegans Hypothetical
protein ZK637.9a protein.
Length = 228
Score = 30.7 bits (66), Expect = 0.95
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 262 RVLPTEGEITKS-VFMSQSTDIYTNLALEDWLYK 360
+++ T E+T S VF+ S+ + ++ LE+W+YK
Sbjct: 191 KLISTSNEVTTSQVFLKSSSSLIFSIELENWVYK 224
>AY513235-1|AAS21678.1| 228|Caenorhabditis elegans thiamine
pyrophosphokinase protein.
Length = 228
Score = 30.7 bits (66), Expect = 0.95
Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 262 RVLPTEGEITKS-VFMSQSTDIYTNLALEDWLYK 360
+++ T E+T S VF+ S+ + ++ LE+W+YK
Sbjct: 191 KLISTSNEVTTSQVFLKSSSSLIFSIELENWVYK 224
>AF098996-2|AAC68711.3| 431|Caenorhabditis elegans Hypothetical
protein T11F1.6 protein.
Length = 431
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +1
Query: 304 MSQSTDIYTNLALEDWLYKNMDFTNHHVMMVWRNEPCVVIGRHQNPWL-EANVPLLS 471
+S +DIY +L++++ + K+++F + + + E VI NP+L +A +P++S
Sbjct: 373 LSYVSDIYGSLSIKNTILKDLNFLSRLMYIALLEENRYVIQIISNPFLYKARLPMIS 429
>AF104858-1|AAC79090.1| 390|Caenorhabditis elegans putative
RNA-binding protein PRP-1 protein.
Length = 390
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 496 RNSGGGTVYHDRGNLNITFFAPRERYDRN 582
R GGGT + DRG + APRE D N
Sbjct: 103 RGRGGGTGFVDRGGRGRSNGAPRESRDNN 131
>AF063007-5|AAD47125.1| 712|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 59
protein.
Length = 712
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 496 RNSGGGTVYHDRGNLNITFFAPRERYDRN 582
R GGGT + DRG + APRE D N
Sbjct: 103 RGRGGGTGFVDRGGRGRSNGAPRESRDNN 131
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 278 RGRSPSQCSCLNRLIFIRTWLWRIGC-IRTWTSQIIML 388
RG++ L F + WL+RIGC ++ W I +
Sbjct: 60 RGKAVGNTVALTARAFFQLWLFRIGCFVQRWAWSTIFI 97
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 278 RGRSPSQCSCLNRLIFIRTWLWRIGC-IRTWTSQIIML 388
RG++ L F + WL+RIGC ++ W I +
Sbjct: 60 RGKAVGNTVALTARAFFQLWLFRIGCFVQRWAWSTIFI 97
>AF040649-3|AAK72087.1| 317|Caenorhabditis elegans Serpentine
receptor, class i protein36 protein.
Length = 317
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 60 IFCKTLIFY*CADNLDVKKTLTKQVKDGSSYGEKNSIQQCL-HICWSCTENIYKKCCGIQ 236
+FC T++ Y D L + K L ++ S KN+++ L H S + I
Sbjct: 201 LFCGTVLTYTTIDMLKILKKLKMKISSNSYTRYKNAVKSLLAHFYTSLLSILPVTAAMIV 260
Query: 237 QSGRIKKGESASN 275
+I+ G+ N
Sbjct: 261 MYAKIENGQDLVN 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,515,015
Number of Sequences: 27780
Number of extensions: 341297
Number of successful extensions: 703
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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