Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25i06
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    30   0.017
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    30   0.017
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    26   0.36 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.84 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.84 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 233 PAKWPHQKRRECFQL 277
           P KWPH+ +R C+QL
Sbjct: 490 PGKWPHEDKRGCYQL 504


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 233 PAKWPHQKRRECFQL 277
           P KWPH+ +R C+QL
Sbjct: 580 PGKWPHEDKRGCYQL 594


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 102 LDVKKTLTKQVKDGSSYGEKNSIQQCLHICWSCTENIYKKCCGIQQ 239
           ++V   L K + D   +     I + LH+  +C EN  K+   +Q+
Sbjct: 67  VEVDDDLIKAIIDSDRHSTTREIAEKLHVSHTCIENHLKQLGYVQK 112


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 364 CSYTTNPPEPSSYKYQSIET 305
           C +T N  EPS   Y+ IET
Sbjct: 564 CFFTMNDLEPSEIFYEKIET 583


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 364 CSYTTNPPEPSSYKYQSIET 305
           C +T N  EPS   Y+ IET
Sbjct: 564 CFFTMNDLEPSEIFYEKIET 583


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/44 (22%), Positives = 19/44 (43%)
 Frame = -2

Query: 367 PCSYTTNPPEPSSYKYQSIET*TLTW*SPPQLEALSPFLMRPLC 236
           PC+   + P+  +  +    T  L+W +P  L   +    R +C
Sbjct: 313 PCTQPPSAPQNLTVNFVDQSTVFLSWNAPHMLGGRTDTTYRVVC 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,346
Number of Sequences: 438
Number of extensions: 3961
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)