Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25h23
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    26   3.1  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   5.5  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   5.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    24   9.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    24   9.6  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    24   9.6  

>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -1

Query: 170 SKNSCWMGSVAF*AAAKFLVTIMEVVAALKPTSFDTSIFLIPIDQGISPRIFSFDS 3
           SK +C+M +     A      I +     +PT     IF+ P+ QGI+  IF F S
Sbjct: 70  SKKACYMLAACIFVAGIVRDLIYQNALKQQPT---LGIFMNPLVQGIAKLIFCFGS 122


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = -1

Query: 227  GLASGTLPPALFCLYSLILSKNSCWMGSV----AF*AAAKFLVTIMEVVAALKPTSFDTS 60
            GL+ G    A  C+   I    SC +  +     F  A   LV+I  +V + K +S    
Sbjct: 1043 GLSGGEKSFATICMLLSIWEAMSCPLRCLDEFDVFMDAVNRLVSIKMMVDSAKDSSDKQF 1102

Query: 59   IFLIPIDQG 33
            IF+ P D G
Sbjct: 1103 IFITPQDMG 1111


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 104 MEVVAALKPTSFDTSIFLIPID 39
           +E+ +AL P  FD S   +PI+
Sbjct: 138 LEIESALPPAMFDASFIFLPIN 159


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 326 NFRDGNAVMSIPGP 285
           NF+ GN VMSI GP
Sbjct: 514 NFQTGNEVMSILGP 527


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +3

Query: 75  GWFEGGDHFHDGH*KFSGSSESYRSHP 155
           G F G  H H GH  F G    +   P
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGP 237


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 286 GPGIDMTAFPSLKFEEPKL 342
           G  +D   FPS+ FE+P L
Sbjct: 246 GTEVDSERFPSVDFEDPSL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,783,444
Number of Sequences: 5004
Number of extensions: 32404
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)