Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25h15
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    29   0.43 
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    29   0.75 
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    28   0.99 
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    28   1.3  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    27   1.7  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    27   1.7  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.3  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    27   3.0  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    26   4.0  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   7.0  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.2  

>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 206 SFLSSPSRNTRAVKMLQRILRDMWVDPEILAELDETQKQTLFCKMR 343
           +FL   S   R +  L+ ++  M  DPE+ A L++T    LFC  R
Sbjct: 564 NFLRDQSGMHRQLDTLRLLIEFM--DPELFAHLEKTDSSNLFCFFR 607


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 462 SPSSPLRNWTCFFPFFWNLGWMSSLLILSSQACHLRTCSSRILQKS 325
           SPS P+ N + F   F NLGW+       S  C L T  S  + +S
Sbjct: 179 SPSRPVINVSFFNYIFQNLGWLIRFSFRKSIICCLFTPFSYAILRS 224


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +2

Query: 200 GSSFLSSPSRNTRAVKMLQRILRDMWVDPEILAELDETQKQ--TLFCKMREEQVRRWQAW 373
           G+  L+        V M  + LRD W  P +  EL+E +KQ   L  + R++ V +    
Sbjct: 144 GAGLLAYLDSQKTHVGMSIKELRDGW--PNVTVELEELEKQGEVLLLRTRKDGVPKMVWR 201

Query: 374 DDKISKDDIQPKFQK 418
           +DK     +  +FQ+
Sbjct: 202 NDKSCDCHVDKEFQQ 216


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 261 SCATCGWIPRSWPNSTRPRNKRSSVKCAR 347
           +C T G + R  P+S  PR      KC R
Sbjct: 62  ACGTAGHLVRDCPSSPNPRQGAECYKCGR 90


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 305 DETQKQTLFCKMREEQVRRWQAWDDKISKDDIQPKFQKNGKKQVQFLKGEDGE 463
           +ETQ+Q +  K   ++++R Q WD    K     + +K  +K+ +  K E GE
Sbjct: 24  NETQEQPVLSKSALKRLKRQQEWDAGREKRAEMRREKKRLRKEERKRKIEAGE 76


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 203 SSFLSSPSRNTRAVKMLQRILRDMWVDPEIL 295
           SSFLS   R+T  + +L   L  + VDPE L
Sbjct: 25  SSFLSQSFRDTNDIHLLSARLASVEVDPETL 55


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 225 PGTQGPSRCCRGSCATCGW 281
           P  + P  CC+  CA C W
Sbjct: 56  PKPEEPLNCCQSGCAICVW 74


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 496 VWMFTHNPNPWFSVFSFKE 440
           +W   H PNPW  V + KE
Sbjct: 6   LWSHAHGPNPWKVVQALKE 24


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 208 VSQ*PFQEHKGRQDAAEDLARHVGGSRDPGRTRRDPETNA 327
           +S+ P  EHK +Q +     R  G SRD  +T+  P +N+
Sbjct: 215 LSKQPVSEHKEKQTSFLRRFRVPGFSRDKDKTKDCPSSNS 254


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 271 VAQDPLQHLDGPCVPGRATEKRRSASKHNHT 179
           + QD LQH++ P      T    S+   N+T
Sbjct: 224 IDQDALQHIEAPATTSSPTSNTSSSKTRNNT 254


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 220 ATEKRRSASKHNHTKAQMFLAN 155
           A E  RSAS  N+T A ++LAN
Sbjct: 90  AIELLRSASHDNNTDAMLYLAN 111


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 327 SVCFWVSSSSARISGSTHMSRKILCSI 247
           + C+W S  SAR+ G+  + R+ L ++
Sbjct: 165 ATCWWTSKESARLGGAGKIHREGLKAV 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,179
Number of Sequences: 5004
Number of extensions: 44725
Number of successful extensions: 138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)