Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25h15
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 30 1.8
09_04_0047 - 14139706-14140140,14140234-14140636,14141028-141412... 29 4.1
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 28 5.4
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146... 28 7.2
07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524 28 7.2
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 28 7.2
02_01_0065 - 477465-477512,477593-477685,477777-478316,478667-47... 28 7.2
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 27 9.5
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 288 SGSTHMSRKILCSILTALVFLEGLLRNEDPHQNTITQKRK 169
+ +TH +R+I+CS+ V R E H N ITQKR+
Sbjct: 294 TATTHSNRRIMCSVAPEAVGSVDKRRIE--HDNQITQKRQ 331
>09_04_0047 -
14139706-14140140,14140234-14140636,14141028-14141272,
14141341-14141576,14141651-14141939
Length = 535
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +1
Query: 91 GNFSFDSVVIISEVKIIFWT*NLRETFALLCDCVLMRIFVSQ*PFQEHKGRQDAAEDLAR 270
G FS+D+ ++I E K F+ + ET ALL +M + + P + K R + A
Sbjct: 323 GEFSYDAQLVIDECKTFFFAGH--ETSALLLTWAIMLLATN--PAWQEKARTEVAAVCGD 378
Query: 271 H 273
H
Sbjct: 379 H 379
>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 386 SKDDIQPKFQKNGKKQVQFLKGEDGEPWVWVMGEHPDDKSIE 511
SKD + K + GK + + K +D EP++ + DDK++E
Sbjct: 903 SKDKDKDKGKGKGKVKEKEKKEKDIEPFIEAFDTYSDDKNVE 944
>12_01_0199 -
1467137-1467172,1467302-1467391,1468304-1468396,
1468488-1469515,1470005-1470552,1470656-1470695,
1473774-1475196
Length = 1085
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 250 AAEDLARHVGGSRDPGRTRRD 312
A E L RHVGGS + G T+RD
Sbjct: 635 AHEFLGRHVGGSANLGYTQRD 655
>07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524
Length = 652
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 498 SSGCSPITQTHGSPSSPLRNWTCFFPF 418
++ CSP +G+P++PL++W P+
Sbjct: 371 TNSCSPSAGHNGAPTAPLQSWPSAPPY 397
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +2
Query: 308 ETQKQTLFCKMREEQVRRWQAWDDKISKDDIQPKFQKNGKKQVQFLKGEDGE 463
E +KQ + + REEQVRR +D+ + + + ++ K++ +F + + E
Sbjct: 453 ELEKQDMLNRKREEQVRREMERNDRERRKEEERLLREKQKEEERFQREQRRE 504
>02_01_0065 -
477465-477512,477593-477685,477777-478316,478667-478670,
479494-480063,480167-480204
Length = 430
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 250 AAEDLARHVGGSRDPGRTRRD 312
A E L RHVGGS + G T+RD
Sbjct: 160 AHEFLGRHVGGSANLGYTQRD 180
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +2
Query: 287 EILAELDET---QKQTLFCKMREEQVRRWQAWDDKISKDDIQPKFQKNGKKQV 436
E+L EL+ + Q + +C + + V+ + W+ I +D++ K K+GKK V
Sbjct: 319 ELLTELEASGFAQDEMPYCILIDGLVKERKIWEAMILFNDMKEKGVKSGKKCV 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,861,278
Number of Sequences: 37544
Number of extensions: 323462
Number of successful extensions: 911
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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