Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25h15
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.82 
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   1.9  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   1.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.8  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   7.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 480 ITQTHGSPSSPLRNW 436
           ITQ  G+P SPL +W
Sbjct: 419 ITQWQGNPISPLNDW 433


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 619 VVDKLCEFLLDGLPELVRLL 560
           + DK+ +FL+D  PE+  LL
Sbjct: 85  IADKVVQFLIDNKPEIWVLL 104


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 619 VVDKLCEFLLDGLPELVRLL 560
           + DK+ +FL+D  PE+  LL
Sbjct: 85  IADKVVQFLIDNKPEIWVLL 104


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 271 HVGGSRDPGRTRRDPETNALL*NARGTGTKMASL 372
           H G   DPG     PET     +A   GT +  L
Sbjct: 280 HYGHHPDPGEVDLPPETQPTPPSATLVGTTITHL 313


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 408 LGWMSSLLILSSQACHLRTCSSR 340
           L W S  L ++  AC +R  + R
Sbjct: 67  LSWQSKWLSINHSACAIRCLAQR 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,093
Number of Sequences: 438
Number of extensions: 3314
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)