Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25h09
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...   103   1e-22
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...   103   1e-22
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    78   4e-15
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198...    28   6.0  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score =  103 bits (246), Expect = 1e-22
 Identities = 52/112 (46%), Positives = 68/112 (60%)
 Frame = +1

Query: 232 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 411
           + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRP
Sbjct: 38  LPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRP 97

Query: 412 ETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQLVV 567
           E                          +P  ++ G N VT L+E+ KAQLVV
Sbjct: 98  E-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVV 148



 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIG 230
           NPLFEKRPK F IG
Sbjct: 22  NPLFEKRPKQFGIG 35


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score =  103 bits (246), Expect = 1e-22
 Identities = 52/112 (46%), Positives = 68/112 (60%)
 Frame = +1

Query: 232 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 411
           + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRP
Sbjct: 22  LPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRP 81

Query: 412 ETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQLVV 567
           E                          +P  ++ G N VT L+E+ KAQLVV
Sbjct: 82  E-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVV 132



 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIG 230
           NPLFEKRPK F IG
Sbjct: 6   NPLFEKRPKQFGIG 19


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 45/112 (40%), Positives = 64/112 (57%)
 Frame = +1

Query: 232 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 411
           + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK       ++L++ + 
Sbjct: 39  LPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQA 98

Query: 412 ETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQLVV 567
           E                          +P  ++ G + VT L+E+ KAQLVV
Sbjct: 99  EA-----------------EGKTVEAKKPIVVKYGLDHVTYLIEQSKAQLVV 133



 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIG 230
           NPLFEKRPK F IG
Sbjct: 23  NPLFEKRPKQFGIG 36


>06_03_0392 +
           20318728-20319309,20319596-20319725,20319844-20319895,
           20319995-20320061,20320547-20320633,20322526-20322567,
           20322635-20322740,20323155-20323219,20323299-20323343,
           20323442-20323549,20323636-20323723,20324147-20324193,
           20324355-20324363
          Length = 475

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 282 PHPASEGCTSASSESAPSDQP 344
           P PA E   +A+ E+APSD P
Sbjct: 53  PQPAPEEAPAAAEEAAPSDDP 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,557,010
Number of Sequences: 37544
Number of extensions: 239579
Number of successful extensions: 718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)