Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25h09
         (567 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal prot...   143   1e-34
AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p pro...   143   1e-34
AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,...   143   1e-34
AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,...   143   1e-34
AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,...   143   1e-34

>X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal protein
           L7a protein.
          Length = 271

 Score =  143 bits (347), Expect = 1e-34
 Identities = 69/112 (61%), Positives = 82/112 (73%)
 Frame = +1

Query: 232 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 411
           +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRP
Sbjct: 50  VQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRP 109

Query: 412 ETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQLVV 567
           E+                         +P+ + +GTNTVTKL+E+KKAQLVV
Sbjct: 110 ESALAKNVRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVV 161



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGHS 236
           N LFEKRPKNF IG +
Sbjct: 34  NQLFEKRPKNFGIGQN 49


>AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p
           protein.
          Length = 271

 Score =  143 bits (347), Expect = 1e-34
 Identities = 69/112 (61%), Positives = 82/112 (73%)
 Frame = +1

Query: 232 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 411
           +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRP
Sbjct: 50  VQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRP 109

Query: 412 ETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQLVV 567
           E+                         +P+ + +GTNTVTKL+E+KKAQLVV
Sbjct: 110 ESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVV 161



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGHS 236
           N LFEKRPKNF IG +
Sbjct: 34  NQLFEKRPKNFGIGQN 49


>AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,
           isoform D protein.
          Length = 271

 Score =  143 bits (347), Expect = 1e-34
 Identities = 69/112 (61%), Positives = 82/112 (73%)
 Frame = +1

Query: 232 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 411
           +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRP
Sbjct: 50  VQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRP 109

Query: 412 ETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQLVV 567
           E+                         +P+ + +GTNTVTKL+E+KKAQLVV
Sbjct: 110 ESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVV 161



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGHS 236
           N LFEKRPKNF IG +
Sbjct: 34  NQLFEKRPKNFGIGQN 49


>AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,
           isoform C protein.
          Length = 271

 Score =  143 bits (347), Expect = 1e-34
 Identities = 69/112 (61%), Positives = 82/112 (73%)
 Frame = +1

Query: 232 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 411
           +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRP
Sbjct: 50  VQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRP 109

Query: 412 ETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQLVV 567
           E+                         +P+ + +GTNTVTKL+E+KKAQLVV
Sbjct: 110 ESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVV 161



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGHS 236
           N LFEKRPKNF IG +
Sbjct: 34  NQLFEKRPKNFGIGQN 49


>AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,
           isoform A protein.
          Length = 271

 Score =  143 bits (347), Expect = 1e-34
 Identities = 69/112 (61%), Positives = 82/112 (73%)
 Frame = +1

Query: 232 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 411
           +QP RDLSRFVRWPKYIR+QRQKAVLQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRP
Sbjct: 50  VQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRP 109

Query: 412 ETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQLVV 567
           E+                         +P+ + +GTNTVTKL+E+KKAQLVV
Sbjct: 110 ESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIEQKKAQLVV 161



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 189 NPLFEKRPKNFAIGHS 236
           N LFEKRPKNF IG +
Sbjct: 34  NQLFEKRPKNFGIGQN 49


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,060,611
Number of Sequences: 53049
Number of extensions: 386189
Number of successful extensions: 1688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1683
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2213979693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)