Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25h09
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 122 2e-28
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 110 6e-25
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 95 2e-20
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 75 4e-14
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.020
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 5.4
AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical ... 28 5.4
AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical ... 28 5.4
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 27 7.1
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 27 7.1
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 27 7.1
AC024848-3|AAP31424.1| 83|Caenorhabditis elegans Hypothetical ... 27 7.1
AC024848-1|AAV34780.1| 258|Caenorhabditis elegans Hypothetical ... 27 7.1
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 122 bits (294), Expect = 2e-28
Identities = 56/112 (50%), Positives = 74/112 (66%)
Frame = +1
Query: 232 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 411
IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRP
Sbjct: 46 IQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRP 105
Query: 412 ETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQLVV 567
E+ RPNT+R G NT+T+LVE ++AQLV+
Sbjct: 106 ESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVL 157
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 189 NPLFEKRPKNFAIG 230
NPLFEKR +NF IG
Sbjct: 30 NPLFEKRARNFNIG 43
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 110 bits (265), Expect = 6e-25
Identities = 56/112 (50%), Positives = 74/112 (66%)
Frame = +1
Query: 232 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 411
IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRP
Sbjct: 46 IQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRP 105
Query: 412 ETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQLVV 567
E+ RPNT+R G NT+T+LVE ++AQLV+
Sbjct: 106 ES--------------------TEVTKRPNTVRHGVNTITRLVETRRAQLVL 137
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 189 NPLFEKRPKNFAIG 230
NPLFEKR +NF IG
Sbjct: 30 NPLFEKRARNFNIG 43
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 95.5 bits (227), Expect = 2e-20
Identities = 40/62 (64%), Positives = 52/62 (83%)
Frame = +1
Query: 232 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRP 411
IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRP
Sbjct: 149 IQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRP 208
Query: 412 ET 417
E+
Sbjct: 209 ES 210
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 189 NPLFEKRPKNFAIG 230
NPLFEKR +NF IG
Sbjct: 133 NPLFEKRARNFNIG 146
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 74.9 bits (176), Expect = 4e-14
Identities = 31/44 (70%), Positives = 38/44 (86%)
Frame = +1
Query: 232 IQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 363
IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 149 IQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 189 NPLFEKRPKNFAIG 230
NPLFEKR +NF IG
Sbjct: 133 NPLFEKRARNFNIG 146
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.020
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -1
Query: 459 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 340
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 332 LRSTNLPRHWTRLQLRA 382
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical
protein Y19D10A.9 protein.
Length = 296
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 282 PHPASEGCTSASSESAPSDQPIYPDTG 362
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
>AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical
protein F56A4.2 protein.
Length = 296
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 282 PHPASEGCTSASSESAPSDQPIYPDTG 362
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 528 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 397
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 528 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 397
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 8 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 528 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 397
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AC024848-3|AAP31424.1| 83|Caenorhabditis elegans Hypothetical
protein Y67D8A.2b protein.
Length = 83
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 259 IWTSHELAECPIAKFFGLFSKRGFTIF 179
I+T HE+ I F F+K GF IF
Sbjct: 38 IYTHHEILLVKIKTIFQFFNKNGFEIF 64
>AC024848-1|AAV34780.1| 258|Caenorhabditis elegans Hypothetical
protein Y67D8A.2a protein.
Length = 258
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 259 IWTSHELAECPIAKFFGLFSKRGFTIF 179
I+T HE+ I F F+K GF IF
Sbjct: 196 IYTHHEILLVKIKTIFQFFNKNGFEIF 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,073,723
Number of Sequences: 27780
Number of extensions: 192020
Number of successful extensions: 473
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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