Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25h07
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 136 4e-33
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 122 4e-29
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos... 114 9e-27
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 28 1.0
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 3.2
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.6
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 9.7
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 136 bits (328), Expect = 4e-33
Identities = 62/167 (37%), Positives = 98/167 (58%), Gaps = 1/167 (0%)
Frame = +3
Query: 57 NVTELATRHGYQCEEHNVVTEDGFVLTVFRVSSGQRCSRTQIPVLLVHGLLQSADSWLDA 236
N+ E+ GY+ EEH V T+D F+L + R++ ++ + V HGL+ +++ W+
Sbjct: 74 NIYEICEAFGYRVEEHLVRTQDNFILCLHRITHPKQSQHKREVVYCHHGLMTNSELWVAV 133
Query: 237 GPGS-GLAYLLADACHDVWLSNTRGNYYSRRHLTLDPDSDAAYWNFSADEIGYFDLPAIL 413
L ++L ++ +DVWL N RGN YSR+H+T P D +WNFS D++ FD+P +
Sbjct: 134 NESERSLPFVLIESGYDVWLGNNRGNKYSRKHITYKP-KDEEFWNFSLDDMAMFDIPDTV 192
Query: 414 DYVLNRSRADILNYVGFSQGAGTFFIMCSERPNYCEKIKLMIALAPA 554
DY+L + + LNY+GFSQG S P+ +K+ + I LAPA
Sbjct: 193 DYILRETGREKLNYIGFSQGTAQAMAALSINPDLNDKVNIFIGLAPA 239
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 122 bits (295), Expect = 4e-29
Identities = 67/173 (38%), Positives = 100/173 (57%), Gaps = 7/173 (4%)
Frame = +3
Query: 57 NVTELATRHGYQCEEHNVVTEDGFVLTVFRVSS---GQRCSR--TQIPVLLVH-GLLQSA 218
++ E+ GY E+H V TED ++L + R+S G+ S ++PV+ H GLL ++
Sbjct: 80 DIREMCKISGYYVEDHLVRTEDDYILCIHRISKDSPGRIGSPHPKKLPVVYCHHGLLMNS 139
Query: 219 DSWL-DAGPGSGLAYLLADACHDVWLSNTRGNYYSRRHLTLDPDSDAAYWNFSADEIGYF 395
+ W+ + P + L + L + +DVWL N RGN YSR+HL D +D +W+FS D+ +
Sbjct: 140 EVWVCNVDPRNCLVFDLVNKGYDVWLGNNRGNKYSRQHLRFD-STDKEFWDFSIDDFAQY 198
Query: 396 DLPAILDYVLNRSRADILNYVGFSQGAGTFFIMCSERPNYCEKIKLMIALAPA 554
D+P +DY+L S L Y+GFSQG F S P +KI +IALAPA
Sbjct: 199 DIPDTIDYILKTSGQTKLTYIGFSQGTAQAFASLSIHPLLNDKINSLIALAPA 251
>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 114 bits (275), Expect = 9e-27
Identities = 60/168 (35%), Positives = 95/168 (56%), Gaps = 5/168 (2%)
Frame = +3
Query: 66 ELATRHGYQCEEHNVVTEDGFVLTVFRVSSGQRCSRTQI----PVLLVHGLLQSADSWL- 230
+L HGY EEH V T DG++L + RV ++ ++ PVL +HGL+ +++SW+
Sbjct: 77 DLCALHGYDLEEHFVRTTDGYLLGLHRVYKKKKGKIEELNYLPPVLFIHGLMMNSESWVC 136
Query: 231 DAGPGSGLAYLLADACHDVWLSNTRGNYYSRRHLTLDPDSDAAYWNFSADEIGYFDLPAI 410
+ + + L + +DVWL N RGN YS +++ + +W+FS D I FD+P+I
Sbjct: 137 NLKKEDAIPFALVEQGYDVWLGNLRGNKYSIKNIKFS-SQNPKFWDFSLDSIAIFDIPSI 195
Query: 411 LDYVLNRSRADILNYVGFSQGAGTFFIMCSERPNYCEKIKLMIALAPA 554
+ Y+L+ + D ++ VGFSQGA F S ++ IALAPA
Sbjct: 196 VKYILSVNSFDSISLVGFSQGAILAFAALSIDTELRNSVRAFIALAPA 243
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -1
Query: 527 DLFTIVRSLGTHDEEGSRALREAHVVEDVGSGPVEDIIKDG 405
DL T+ + T++EEGS +A+ ++ +E++ +DG
Sbjct: 1135 DLMTMFNNARTYNEEGSFVYEDANKMQTAMETKIEELEEDG 1175
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 294 SNTRGNYYSRRHLTLDPDSDAAYWNFSADEIGYFDLP 404
SNTR Y+ DS A WN+ + +G LP
Sbjct: 404 SNTREKYWDNVLTAHKNDSSARTWNWKSKTLGQHVLP 440
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 250 PEPGPASSHESALC-SRPCTSSTGICVREHRWPLDTRKTVSTNPSSVTT 107
P P+SS SA S T S V EH P + + +P+S+T+
Sbjct: 155 PANSPSSSSSSASTKSTATTQSADYVVAEHFAPQRNDEQLGNSPASITS 203
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 126 FVLTVFRVSSGQRCSRTQIPVLLVHGLLQSADSW 227
F +++ +VS+ + C++ PV L + Q DS+
Sbjct: 844 FAISLMKVSTFESCTKELPPVTLPENIRQHLDSY 877
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,649
Number of Sequences: 5004
Number of extensions: 44573
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -