Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25h07
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.4  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.9  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 25/95 (26%), Positives = 37/95 (38%)
 Frame = +3

Query: 195 VHGLLQSADSWLDAGPGSGLAYLLADACHDVWLSNTRGNYYSRRHLTLDPDSDAAYWNFS 374
           +HGL  SA +    GPG+  A  L      V    + G   S        +SD +  + S
Sbjct: 143 LHGLSSSAPTGSSCGPGAAAAAALLSKRRSV-SECSLGTASSTSSTASSRNSDRSAGSPS 201

Query: 375 ADEIGYFDLPAILDYVLNRSRADILNYVGFSQGAG 479
             E    D   ++ Y  N+S  D  + V  S  +G
Sbjct: 202 VSESDEVD---VIGYTSNQSDTDDHSSVQSSSDSG 233


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 579 TMYRRLTQAVQGWETLLTTAGLHEIF 656
           T Y+  + +V+GWE   T   L+E F
Sbjct: 334 TRYKDSSSSVEGWENRATIPELNEEF 359


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -1

Query: 224 RVSALQQTVHEQHWDLCTRAPLAARHAENGQHESVLRDY 108
           R    +Q VH Q +    R+P  + H+ +    +V+  Y
Sbjct: 66  RAEDYRQEVHAQVYSCLARSPAGSVHSRDVNVRAVVAQY 104


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 636 PSSTASPNPALLES 595
           PSS+ SP+P+LL S
Sbjct: 38  PSSSRSPSPSLLTS 51


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 190 CSCTVCCRALTRGW 231
           C C +C +A +R W
Sbjct: 43  CKCHLCGKAFSRPW 56


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 551 GDETDEYEINDVSKADS 601
           GD+ ++YE ND    D+
Sbjct: 110 GDDNNDYEDNDYGNQDN 126


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 648 HVDLPSSTASPNPALLESAFDTSL 577
           +V LP+ST S +P  L     TSL
Sbjct: 364 NVTLPTSTYSGSPTELPKHLPTSL 387


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 548 SGDETDEYEINDVSKADSS 604
           SGDE+D  E+  V  + SS
Sbjct: 433 SGDESDVVELQPVKSSKSS 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,006
Number of Sequences: 438
Number of extensions: 3238
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)