Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25h06
         (104 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    38   2e-04
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    38   2e-04
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    22   9.3  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 37.5 bits (83), Expect = 2e-04
 Identities = 15/22 (68%), Positives = 20/22 (90%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRI 102
           M QR+T+RRRL+YNT+SN+ RI
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRI 22


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 37.5 bits (83), Expect = 2e-04
 Identities = 15/22 (68%), Positives = 20/22 (90%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRI 102
           M QR+T+RRRL+YNT+SN+ RI
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRI 22


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -1

Query: 41  TIFKLFDSW 15
           T+FK+FD+W
Sbjct: 518 TVFKIFDTW 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,206
Number of Sequences: 5004
Number of extensions: 3373
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 16
effective length of database: 2,282,414
effective search space used: 41083452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)