Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25h06
         (104 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381...    37   0.003
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155...    37   0.003
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328...    37   0.003
08_01_0771 - 7464383-7464655,7464901-7464915,7465098-7465418           26   3.6  

>09_04_0106 -
           14636773-14636863,14636948-14637057,14638107-14638186,
           14638302-14638380
          Length = 119

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRI 102
           MVQRLT+R+R SY TKSNQ R+
Sbjct: 1   MVQRLTYRKRHSYATKSNQTRV 22


>08_02_0790 -
           21214282-21214369,21214455-21214564,21215478-21215557,
           21215659-21215737
          Length = 118

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRI 102
           MVQRLT+R+R SY TKSNQ R+
Sbjct: 1   MVQRLTYRKRHSYATKSNQTRV 22


>08_01_0372 +
           3286861-3286939,3287220-3287299,3289041-3289150,
           3289224-3289311
          Length = 118

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRI 102
           MVQRLT+R+R SY TKSNQ R+
Sbjct: 1   MVQRLTYRKRHSYATKSNQTRV 22


>08_01_0771 - 7464383-7464655,7464901-7464915,7465098-7465418
          Length = 202

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 38  WCSGLHSGDDCRTTQNQ 88
           WC+G HSG D R    Q
Sbjct: 60  WCTGTHSGADMRARPRQ 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,013
Number of Sequences: 37544
Number of extensions: 20474
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 14,793,348
effective HSP length: 16
effective length of database: 14,192,644
effective search space used: 255467592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)