Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25h06
         (104 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...    34   0.012
U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in ge...    25   5.4  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    25   5.4  
AL132949-36|CAJ58501.1|  311|Caenorhabditis elegans Hypothetical...    25   7.1  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRI 102
           M  R+T+RRRLSYNT SN++R+
Sbjct: 1   MSLRVTYRRRLSYNTTSNKKRL 22


>U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform b protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 13  HQLSKSLKMVQRLTFRRRLSYNTK 84
           H   +S +M +    RR++SYNTK
Sbjct: 62  HDFQQSAQMAEDANQRRQVSYNTK 85


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 13  HQLSKSLKMVQRLTFRRRLSYNTK 84
           H   +S +M +    RR++SYNTK
Sbjct: 62  HDFQQSAQMAEDANQRRQVSYNTK 85


>AL132949-36|CAJ58501.1|  311|Caenorhabditis elegans Hypothetical
           protein Y53F4B.42 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 80  VLYDSRRLNVSRCTIFKLFDSW*QGK 3
           V++  RRL V+R    K++  W QGK
Sbjct: 281 VMHVDRRLIVNRAKQVKMYRQWIQGK 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,405
Number of Sequences: 27780
Number of extensions: 19679
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 12,740,198
effective HSP length: 16
effective length of database: 12,295,718
effective search space used: 221322924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)