Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25h06
         (104 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   0.80 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   3.2  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    19   5.6  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 0.80
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 23  QKA*KWCSGLHSGDDC 70
           QKA   C G+  GD+C
Sbjct: 109 QKAISECKGIAKGDNC 124


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 4   FPCHQLSKSLKMVQRLTFRRRL 69
           + C   SKS  + + L+  RR+
Sbjct: 120 YQCEYCSKSFSVKENLSVHRRI 141


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +2

Query: 53  HSGDDCRTTQNQIK 94
           ++GDDC+ T   ++
Sbjct: 117 YTGDDCQKTYQYVQ 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,813
Number of Sequences: 438
Number of extensions: 234
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 15
effective length of database: 139,773
effective search space used:  2655687
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)