Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25h02
         (678 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   320   2e-89
EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.           28   0.31 
AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.        27   0.72 
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    23   8.9  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  320 bits (787), Expect = 2e-89
 Identities = 153/214 (71%), Positives = 179/214 (83%)
 Frame = +1

Query: 37  GKIKACRRAVKKVLRRRCNVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGL 216
           GK K   +  KK  +++  VDPFTRKDWYDVKAP+MF  RQ G TLVNRTQGTKIAS+GL
Sbjct: 4   GKNKGVSKGGKKGSKKKV-VDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGL 62

Query: 217 KGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 396
           KGRVFEVSLADLQ + DAERSFRKF+L+AE V GR+VL NFHGM LTTDKLR MV KWQT
Sbjct: 63  KGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQT 122

Query: 397 LIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNS 576
           LIE ++DVKTTDG++LRVFCIGFT KDS+SQRKTCYAQH+Q++ IR KM  II R++T++
Sbjct: 123 LIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITST 182

Query: 577 ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 678
           +L+ VV KL+PDSIAKDIEKAC  +YPL DV IR
Sbjct: 183 DLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIR 216


>EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 0.31
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +1

Query: 235 VSLADLQADTDA-ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 396
           V+LA+L A +D  E    ++  I + +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 181 VNLAELAASSDTLEHLNLQYNFIYD-IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 234


>AY344814-1|AAR03842.1|  286|Anopheles gambiae LRR Toll protein.
          Length = 286

 Score = 26.6 bits (56), Expect = 0.72
 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +1

Query: 235 VSLADLQADTDA-ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 396
           V+LA+L A +D  E    ++  + + +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 106 VNLAELAASSDTLEHLNLQYNFMYD-IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 159


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 672 ANIAQRVDAMAGLLDVLGNGVRNQLV 595
           AN  QR++    L D++G+  RN+++
Sbjct: 563 ANALQRINTPKYLYDIIGDYFRNRVL 588


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,168
Number of Sequences: 2352
Number of extensions: 16394
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)