Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25g20
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   3.8  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   3.8  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    24   6.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        24   8.8  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   8.8  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 360  YNLIYSIIGTIKLMHINFLNASIL-RKRKLSKTAFT 256
            Y+LI  + GT K   I+ L  S+L +K+K+  T+FT
Sbjct: 950  YSLILGMPGTGKTTTISSLIRSLLAKKKKILLTSFT 985


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 286 EAQIIKDSIYDNTVLLNRDVFLNILKFANDVF 191
           E+ IIK S+  N  L  RD+F  ++K     F
Sbjct: 655 ESPIIKRSLIRNNRLKGRDLFSELVKITESSF 686


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 220  NILKFANDVFDNKAYMYVDDSEVSRYYNAVVKM 122
            +++KF    FDN   +Y++D +++  Y+ V K+
Sbjct: 1051 SVIKFCVVDFDNNRVVYLNDEDIT--YDVVEKL 1081


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 265  SIYDNTVLLNRDVFLNILKFANDVFDN 185
            SI    V L  D FLN++ F  ++FD+
Sbjct: 3752 SISRTQVDLTNDEFLNLMNFVLNLFDS 3778


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 82  QSLYNTIAYIERLLN--IGTVNDSEITML 2
           +S+YN+  Y+E LLN  +  V DS + +L
Sbjct: 113 RSIYNSTVYLEYLLNSSVLEVIDSTLALL 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,001
Number of Sequences: 5004
Number of extensions: 24414
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)