Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25g09
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.4  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.1  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   7.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   7.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 331 GDTQCGKTSLVQRFVSDTFIEA 396
           GD  CG+    +++ +DTF  A
Sbjct: 644 GDEMCGQEQAFRKWAADTFAVA 665


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/34 (23%), Positives = 15/34 (44%)
 Frame = -1

Query: 502 PCRRTSFRTYPRLKSLLCNRPLSMCSCTSRSRSE 401
           P     +  YP   +L  N+P + C  T+   ++
Sbjct: 209 PAANWGYYAYPYCYNLTPNQPSAQCEATTMQEND 242


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 369 ICVRYIY*GLHSDRLREVQLHMLSGRLQSKLFNLGYVRND 488
           I  RY++     D    V  H++ G L S L    YV+ D
Sbjct: 348 IISRYVFRSALEDYCNIVATHLVCGILGSILVPFFYVQED 387


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 337 TQCGKTSLVQRFVSDTFIEAYTPTGFEKYSY 429
           TQC K + +Q+   D   E +T    EK+++
Sbjct: 73  TQCKKCTEIQKQNLDKLAEWFTTNEPEKWNH 103


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 337 TQCGKTSLVQRFVSDTFIEAYTPTGFEKYSY 429
           TQC K + +Q+   D   E +T    EK+++
Sbjct: 73  TQCKKCTEIQKQNLDKLAEWFTTNEPEKWNH 103


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 415 EKYSYTCSVADYKVNFSIWD 474
           E    TC VA Y +   +W+
Sbjct: 506 ETLRVTCPVAGYPIESIVWE 525


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,410
Number of Sequences: 438
Number of extensions: 2895
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)