Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25g06
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    29   0.50 
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    25   6.1  

>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +3

Query: 291 QETVTVQKQKYETTLLENYDIRNRNATT 374
           QET    KQK +TT  E+Y++RNRN  T
Sbjct: 228 QETQD-DKQKPKTTQQEHYNLRNRNQAT 254


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/60 (23%), Positives = 32/60 (53%)
 Frame = +3

Query: 27  VQLLFVVKKHIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIK 206
           VQ +F +K+ +  PT  D I     G + + ++ +   ++  +   +LG+F+  N+ L++
Sbjct: 244 VQGVFELKERL--PTVIDSIIDAIDGISKSAVLALTSESDKNSSAKKLGEFIVLNQKLLE 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,027
Number of Sequences: 5004
Number of extensions: 31017
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)