Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25g06
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0808 + 32134765-32136570                                         29   2.0  
03_06_0775 - 36174098-36174204,36174540-36174594,36174690-361747...    27   8.2  

>01_06_0808 + 32134765-32136570
          Length = 601

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 59  YETDGGRHYIKSDGRSHRQQYRRYHP 136
           Y T  GR+Y + DG  H ++Y +Y P
Sbjct: 558 YRTFTGRYYSRLDGTRHLERYIKYKP 583


>03_06_0775 -
           36174098-36174204,36174540-36174594,36174690-36174741,
           36174947-36175028,36175110-36175204,36175339-36175727
          Length = 259

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 48  KKHIMKPTAADIISRVTGGRTGNNIVDIIQ 137
           ++ ++KP  A +    TGGR G+ + D+IQ
Sbjct: 52  QEFVLKPVQATLGPNSTGGRGGSPLPDVIQ 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,027,396
Number of Sequences: 37544
Number of extensions: 186389
Number of successful extensions: 457
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)