Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25g05
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0664 - 27066253-27067155,27067242-27067508,27067707-270683... 36 0.011
07_01_0463 + 3502708-3503535 30 0.75
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 28 2.3
08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,561... 28 2.3
03_05_0999 - 29583959-29584711,29584797-29585021,29585163-295853... 28 3.0
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188... 28 3.0
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 27 4.0
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582... 27 4.0
07_03_1570 + 27797315-27797409,27797519-27797551,27798135-277981... 27 5.3
07_01_0470 + 3556505-3556588,3557267-3557860 27 5.3
05_05_0016 - 21542300-21542886,21542956-21543286,21543310-215434... 27 5.3
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 27 5.3
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 27 7.0
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 27 7.0
11_06_0710 - 26492093-26493460 27 7.0
08_01_0329 - 2962018-2962695 27 7.0
07_01_0323 - 2264356-2264650,2265519-2266294 27 7.0
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196... 27 7.0
03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098 27 7.0
02_05_0255 - 27184306-27184914,27185009-27185272 26 9.2
>04_04_0664 -
27066253-27067155,27067242-27067508,27067707-27068368,
27068479-27069047,27070011-27070108
Length = 832
Score = 35.9 bits (79), Expect = 0.011
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 32 DAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVD-SEGGKKRVFNTKTLKDQNGQ 193
D+G KK KK + D +D+E+ ++EN D ++G ++ V N + +++G+
Sbjct: 279 DSGKKKKKKKAARKMSSDEDDIEVEENEENTDNDGNDGNEEHVENEENEGNKSGE 333
>07_01_0463 + 3502708-3503535
Length = 275
Score = 29.9 bits (64), Expect = 0.75
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 2 VMESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEM-SSDDENVVVDSEGGKKRVFNTKTLK 178
+++ E+V LD+ D KS +D +KD E+ + DDE+ D EG KK + K
Sbjct: 56 IVDKEEVK-LDSDDGAKSAVKSKDSKKDKENKKSDKKDDEHDDEDEEGKKKEKEMKEKKK 114
Query: 179 DQN 187
D++
Sbjct: 115 DKS 117
>10_08_0573 +
18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +2
Query: 17 QVIFLDAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFN 163
QV+F +A +L K KK+ + DNE ++ S+ E + GG+K FN
Sbjct: 60 QVLFQNAMELLK-KKLEFACDIDNEGQKLMSNMEMIQAVLRGGEKMKFN 107
>08_01_0649 +
5607234-5608397,5609358-5609513,5609598-5609796,
5612419-5613608,5614505-5614660,5614742-5615041
Length = 1054
Score = 28.3 bits (60), Expect = 2.3
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 32 DAGDLKK---SKKVLEDI--EKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQY 196
D+GD + SK L+D E D+ED S D E V D EGG R + D++ Y
Sbjct: 802 DSGDKRNRDGSKSDLDDHDGEYDHEDGSESGDKE--VDDLEGGDDRTVTYGEIADESSSY 859
Query: 197 PV 202
+
Sbjct: 860 GI 861
>03_05_0999 -
29583959-29584711,29584797-29585021,29585163-29585360,
29585472-29586056
Length = 586
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 32 DAGDLKKSKKVLEDIEKDNEDVEMSSDDE 118
D G +KKSK+ LE E++ ++V+ SD+E
Sbjct: 99 DGGGVKKSKEELE--EEEQQEVDWRSDEE 125
>02_01_0282 +
1882844-1883413,1883519-1883644,1883733-1883930,
1884442-1884666,1884844-1885224,1885282-1885989,
1886546-1886839,1887211-1887709,1887949-1888721
Length = 1257
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 41 DLKKSKKVL-EDIEKDNEDVEMSSDDENVVVDSEGG 145
DLK S++ D ++D+ V++ DDE +V D+E G
Sbjct: 858 DLKGSRRQSGSDDDEDDACVDIEDDDETIVEDAEVG 893
>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 68 EDIEKDNEDVEMSSDDENVVVDSEGG 145
+ +++DN+D EM DD D +GG
Sbjct: 1808 QHVDEDNDDAEMGEDDVEDNDDGDGG 1833
>04_04_1475 +
33856351-33856582,33857614-33857781,33858156-33858261,
33858391-33858442,33858525-33858642,33858736-33858766,
33858962-33858985,33859075-33859199,33860087-33860168,
33860319-33860441,33860539-33860592,33860669-33860738,
33861276-33861309,33861824-33862170
Length = 521
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +2
Query: 47 KKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKR 154
KK+K V E E D+E+ + S DDEN + +GGK R
Sbjct: 431 KKTKDVSESEEDDDEEDD-SDDDENGEI--KGGKGR 463
>07_03_1570 +
27797315-27797409,27797519-27797551,27798135-27798199,
27798406-27798493,27798579-27798651,27798975-27799081,
27799595-27799637,27799760-27799816,27799905-27799981,
27800221-27800266,27800364-27800410,27800498-27800571,
27800656-27800711,27800885-27801011,27801133-27801206
Length = 353
Score = 27.1 bits (57), Expect = 5.3
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 32 DAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSE-GGKKRVFNTKTLKDQNGQYP 199
D DL +++++D + +D + SDD+ + VD + K +TKT K Q+ P
Sbjct: 290 DLQDLLNRQQLVQDDKLGEQDSD-DSDDDGMDVDMDPNSSKGSRSTKTSKGQSSDRP 345
>07_01_0470 + 3556505-3556588,3557267-3557860
Length = 225
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +2
Query: 47 KKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQ 184
+KS +E ++++NE+ + +S N+ + KKR K K++
Sbjct: 73 RKSSTPIERVDEENEEGDDASKSTNLDLSQASAKKRPICRKQAKEK 118
>05_05_0016 -
21542300-21542886,21542956-21543286,21543310-21543419,
21543526-21544069,21544190-21544345
Length = 575
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 47 KKSKKVLEDIEKDNEDVEMSSDDENVVVDSEG 142
KK KK D +DVE+ ++EN D+EG
Sbjct: 285 KKKKKAARKSSSDEDDVEVEENEEN--SDNEG 314
>03_05_1122 + 30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 27.1 bits (57), Expect = 5.3
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Frame = -1
Query: 197 GTVRSDLS---RFSY*KLFSCRLHYRPQRFHHLNSF----RRLHYPFRCLLI 63
GTV S L R+ Y LFSC +HYR + F L + + L F C +I
Sbjct: 1057 GTVNSALMQSLRYIY-SLFSCDIHYRGKLFEGLRNLLAVKKDLEPEFSCRII 1107
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 56 KKVLEDIEKDNEDVEMSSDDENVVVDSEGGKK 151
+K +E + E +E S+DE +S+GGKK
Sbjct: 679 RKKRRRLEAEREMLEDESEDEEEAKESKGGKK 710
>11_08_0035 - 27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 68 EDIEKDNEDVEMSSDDENVVVDSE 139
ED ++D+ED SDD++V ++E
Sbjct: 981 EDTDEDDEDYNQDSDDDDVREETE 1004
>11_06_0710 - 26492093-26493460
Length = 455
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 32 DAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKR 154
D D KKSKK ++ + D+ED + S ++ D++G KK+
Sbjct: 170 DEDDKKKSKKKPKNPD-DDEDDKKKSKKKSSDEDNDGAKKK 209
>08_01_0329 - 2962018-2962695
Length = 225
Score = 26.6 bits (56), Expect = 7.0
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 35 AGDLKKSKKV--LEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQYPVW 205
AG K +KK E+ EKD +SS+DE + + K+R K + +N W
Sbjct: 163 AGKAKSTKKDDDEEEEEKDQTSSSVSSEDEEEEEEEKLEKERERKRKEMMSKNKSKTKW 221
>07_01_0323 - 2264356-2264650,2265519-2266294
Length = 356
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 35 AGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGK 148
AGD K+K V + DV+ + D VVV+ + K
Sbjct: 178 AGDQDKAKNVAAVVVDGTSDVDKAKDVAGVVVEGDADK 215
>06_03_1180 +
28218386-28218649,28218725-28219202,28219309-28219697,
28219785-28220426,28220466-28221368
Length = 891
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 44 LKKSKKVLEDIEKDNEDVEMSSDDENV 124
LKK K V + D++DVE+ DE +
Sbjct: 305 LKKKKSVKPSSDDDDDDVELEDVDEEI 331
>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
Length = 221
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 62 VLEDIEKDNEDVEMSSDDENVVVDSEGG 145
V+ED + D++D E DDE+ D E G
Sbjct: 41 VVEDAKDDDDDEEDDDDDEDEDEDGEQG 68
>02_05_0255 - 27184306-27184914,27185009-27185272
Length = 290
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 47 KKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQ 184
+K + +L + + + SSD+E V+D G + K LK++
Sbjct: 70 EKKESLLSKLHRSSSSSSSSSDEEEEVIDDNGEVVKRKKKKGLKEK 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,307,589
Number of Sequences: 37544
Number of extensions: 78684
Number of successful extensions: 439
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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