Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25g05
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.41 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   2.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   3.8  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   5.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   8.7  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.6 bits (51), Expect = 0.41
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = -1

Query: 158 KLFSC-RLHYRPQRFHHLNSFRRLH---YPFRC 72
           K F C   H R  R HHL +  RLH    P+ C
Sbjct: 8   KPFECPECHKRFTRDHHLKTHMRLHTGEKPYHC 40


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 44  LKKSKKVLEDIEKDNEDVEMSSDDENVV 127
           L K++    D EK  ED+EM +  EN++
Sbjct: 495 LSKAELDKMDKEKKLEDLEMGTPLENIL 522


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 83  DNEDVEMSSDDENVVVDSEGGKKRVF-NTKTLK 178
           DN++V M + +     DS+  K ++F N + +K
Sbjct: 178 DNQEVSMENTENKSCTDSDIEKYKMFCNLENVK 210


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 92  LHYPFRCLLILFCFSLNRPRPEI 24
           L Y     +  FC +   PRPEI
Sbjct: 32  LDYMLGRKITFFCMATGFPRPEI 54


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 71  DIEKDNEDVEMSSDDENVVVD 133
           +IE DN        +EN +VD
Sbjct: 79  EIESDNSKEVNDKKEENFIVD 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,366
Number of Sequences: 438
Number of extensions: 1218
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)