Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25f20
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    24   7.2  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     24   7.2  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    24   9.5  

>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 285 HEWAGIISCHTEQGWVPVASFVDGRGEC 202
           HE+  +++C +  G V V  F D  G C
Sbjct: 110 HEYGALLACASSDGKVSVLEFKDD-GSC 136


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 149 KLKKTLSISVASI*SPMPHSPLPSTK 226
           +++   ++SV  I  P+ H P P TK
Sbjct: 53  RIEANSAVSVEVILQPLDHEPAPGTK 78


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 960

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +3

Query: 168  LYQ*QVYDRLCRTLLYHLQKMQLAP----SLVQYD 260
            LYQ + YD+  R +L H  K +L P     +V YD
Sbjct: 913  LYQKKNYDKYRRFVLIHELKNELTPVNGLDIVDYD 947


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,209,118
Number of Sequences: 5004
Number of extensions: 20618
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)