Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25f20
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    26   8.2  

>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 267 ISCHTEQGWVPVASFVDGRGECGIGDHILATDIDNVFFN 151
           ++C +   WV   S      E  IGD++L  D+    F+
Sbjct: 800 LTCFSRDTWVTTPSGKKRMDEIEIGDYVLTADLKTALFS 838


>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 151 IEKNVVYISSKYMIAYAALSSTIYKRCNWHPALFSMTAYNSSPFMIRC 294
           +EK + + SS   IAY+    T+     +   L  + + NS P ++ C
Sbjct: 217 LEKLIAHRSSSVCIAYSEKIKTLASEQEYRQVLTRLDSQNSRPQVVVC 264


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +1

Query: 151 IEKNVVYISSKYMIAYAALSSTIYKRCNWHPALFSMTAYNSSPFMIRC 294
           +EK + + SS   IAY+    T+     +   L  + + NS P ++ C
Sbjct: 217 LEKLIAHRSSSVCIAYSEKIKTLASEQEYRQVLTRLDSQNSRPQVVVC 264


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 104 YS*DSNLKIFITFRVKLKKTLSISVASI*SPMPHSPLPSTKDATGTQPCS 253
           Y  D NLK     +  L  T S+ ++SI S + H+ +P T     +Q  S
Sbjct: 241 YVYDENLKAGNPLKNNLSSTSSLLLSSINSNLSHNSIPQTSPKRISQSSS 290


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 264 SCHTEQGWVPVASFVDGRGEC--GIGDHILATDIDNVFFNFTLNVIN 130
           SC + +  +P+    DGR +C  G  +H   T+ D+   N T    N
Sbjct: 196 SCESSKKCIPLEQKCDGRRDCPDGEDEHQCETECDSKGGNATFRCTN 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,581,058
Number of Sequences: 27780
Number of extensions: 112618
Number of successful extensions: 248
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)