Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25f16
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   2.7  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   6.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   6.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.2  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 198 QRCTSGPGLTQ*KLWC 245
           QRC +G    + KLWC
Sbjct: 452 QRCNAGLVFDEEKLWC 467


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 423 SSIRSINGPQQGLRF 467
           + IR+I GP++ LRF
Sbjct: 278 TQIRNIRGPRKRLRF 292


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 540 VETFKCVNLLIS 505
           VE+F CVN L+S
Sbjct: 342 VESFVCVNTLVS 353


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 368 PTVQARLPTYRRAALAVLAITYNDTISNRCKER 270
           P V++   T R   ++ +   Y D ++ RC+ER
Sbjct: 737 PRVESFAETVR--TVSKIPPLYKDLVAKRCEER 767


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 410 TGPNCEKYSRSCRWPTVQARLPT 342
           TG NCE Y R       +A +PT
Sbjct: 448 TGKNCEIYDRGFPGGLGRAVVPT 470


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,729
Number of Sequences: 336
Number of extensions: 2781
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)