Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25f13
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.57 
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    28   1.3  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    27   2.3  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    27   2.3  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   7.0  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   7.0  

>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 342 FKNHLDSIPTDDTEYDLTEHTLTKKIKVKLPISEELK 452
           FK+HL +   + T Y+  +   T K  V LP+S E++
Sbjct: 102 FKDHLSASLPNKTSYEQADTNATSKSLVDLPVSLEVR 138


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 549 QLLISN*SHILMRKIQQYQQFQTYEI*RRILSS 451
           QLL  N + +LMR I Q +++ +Y +  RI+S+
Sbjct: 315 QLLSKNRNWVLMRDIVQLEEYNSYLLDHRIVSA 347


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 224 EPIQFIHSGLSI*AFCFYTFLLFLVFRNYFSVFINQSTFPVVFGN*D 84
           E IQ  HS L   +FCFY  +L  V++  F+ F+ +   P +F + D
Sbjct: 561 EGIQIDHSRLRECSFCFYA-VLARVYKEEFAPFL-EHIVPALFKSID 605


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 378 TEYDLTEHTLTKKIKVKLPISEELKMTK 461
           TE+ L EH L KK  + + I E+L++ +
Sbjct: 353 TEFSLNEHPLPKKTLLTISIFEKLRLIR 380


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 241 KVSVSWSRFSSFTVGCRYKLFVF 173
           K++ +W RF+   VGC    F+F
Sbjct: 317 KINGAWRRFTGDEVGCILAYFIF 339


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -1

Query: 583 VYVCDGTVIC 554
           +YVCDGTV+C
Sbjct: 801 LYVCDGTVLC 810


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,324
Number of Sequences: 5004
Number of extensions: 38826
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)