Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25f13
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235...    29   4.1  
08_01_0653 + 5633673-5634821,5635730-5635885,5635942-5636152,563...    27   9.5  

>06_01_0324 -
           2357432-2357724,2358042-2358105,2358321-2358404,
           2358638-2358715,2359298-2359360,2359459-2359561,
           2359675-2359800,2360212-2360258,2361284-2361388,
           2361483-2361605,2361759-2361854,2362052-2362141,
           2362759-2362815,2362899-2363028,2363613-2363708,
           2363815-2363875,2364391-2364490
          Length = 571

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 546 VDLQITVPSQTYTKNDSINYR 608
           VDL    P Q +T ND INYR
Sbjct: 242 VDLNRDFPDQFFTNNDEINYR 262


>08_01_0653 +
           5633673-5634821,5635730-5635885,5635942-5636152,
           5636488-5636624
          Length = 550

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +3

Query: 384 YDLTEHTLTKKIKVKLPISEELKMTKCVFKFHKFETVDIVGSYALGCAINSKLVVDLQIT 563
           Y L +  + K++       EEL +  CV   H+  +  +       C IN    VDL IT
Sbjct: 170 YVLIDDKILKQLSSGCKSLEELDLKDCVMTGHQISSASLKTLKMDRCKIN----VDLSIT 225

Query: 564 VPSQTY 581
            P+  +
Sbjct: 226 APNLVF 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,410,445
Number of Sequences: 37544
Number of extensions: 196506
Number of successful extensions: 373
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)