Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25f13
         (640 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC030139-1|AAH30139.1| 1143|Homo sapiens NOL6 protein protein.         72   2e-12
AL356218-13|CAI13314.1|  699|Homo sapiens nucleolar protein fami...    72   2e-12
AL356218-12|CAI13315.1| 1146|Homo sapiens nucleolar protein fami...    72   2e-12
AL356218-11|CAI13313.1| 1023|Homo sapiens nucleolar protein fami...    72   2e-12
AF361081-1|AAL74405.1|  699|Homo sapiens nucleolar RNA-associate...    72   2e-12
AF361080-1|AAL74404.1| 1007|Homo sapiens nucleolar RNA-associate...    72   2e-12
AF361079-1|AAL74403.1| 1146|Homo sapiens nucleolar RNA-associate...    72   2e-12

>BC030139-1|AAH30139.1| 1143|Homo sapiens NOL6 protein protein.
          Length = 1143

 Score = 72.1 bits (169), Expect = 2e-12
 Identities = 45/151 (29%), Positives = 72/151 (47%)
 Frame = +3

Query: 186 LYRQPTVNELNRLQETETLFNSNLFRXXXXXXXXXXXXXXXXXXRFLQWFKDFKNHLDSI 365
           LY++PT  ELNRL+ETE LF+S+L R                  R   + ++    +  +
Sbjct: 60  LYKEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDRIDAFLREVNQRVVRV 119

Query: 366 PTDDTEYDLTEHTLTKKIKVKLPISEELKMTKCVFKFHKFETVDIVGSYALGCAINSKLV 545
           P+   E +LT+        V++P+ +     K  F+F     V +VGSY LG  I   + 
Sbjct: 120 PSVP-ETELTDQAWLPA-GVRVPLHQVPYAVKGCFRFLPPAQVTVVGSYLLGTCIRPDIN 177

Query: 546 VDLQITVPSQTYTKNDSINYRYHKKTCSLLS 638
           VD+ +T+P +     D +N RY +K    L+
Sbjct: 178 VDVALTMPREILQDKDGLNQRYFRKRALYLA 208


>AL356218-13|CAI13314.1|  699|Homo sapiens nucleolar protein family
           6 (RNA-associated) protein.
          Length = 699

 Score = 72.1 bits (169), Expect = 2e-12
 Identities = 45/151 (29%), Positives = 72/151 (47%)
 Frame = +3

Query: 186 LYRQPTVNELNRLQETETLFNSNLFRXXXXXXXXXXXXXXXXXXRFLQWFKDFKNHLDSI 365
           LY++PT  ELNRL+ETE LF+S+L R                  R   + ++    +  +
Sbjct: 60  LYKEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDRIDAFLREVNQRVVRV 119

Query: 366 PTDDTEYDLTEHTLTKKIKVKLPISEELKMTKCVFKFHKFETVDIVGSYALGCAINSKLV 545
           P+   E +LT+        V++P+ +     K  F+F     V +VGSY LG  I   + 
Sbjct: 120 PSVP-ETELTDQAWLPA-GVRVPLHQVPYAVKGCFRFLPPAQVTVVGSYLLGTCIRPDIN 177

Query: 546 VDLQITVPSQTYTKNDSINYRYHKKTCSLLS 638
           VD+ +T+P +     D +N RY +K    L+
Sbjct: 178 VDVALTMPREILQDKDGLNQRYFRKRALYLA 208


>AL356218-12|CAI13315.1| 1146|Homo sapiens nucleolar protein family
           6 (RNA-associated) protein.
          Length = 1146

 Score = 72.1 bits (169), Expect = 2e-12
 Identities = 45/151 (29%), Positives = 72/151 (47%)
 Frame = +3

Query: 186 LYRQPTVNELNRLQETETLFNSNLFRXXXXXXXXXXXXXXXXXXRFLQWFKDFKNHLDSI 365
           LY++PT  ELNRL+ETE LF+S+L R                  R   + ++    +  +
Sbjct: 60  LYKEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDRIDAFLREVNQRVVRV 119

Query: 366 PTDDTEYDLTEHTLTKKIKVKLPISEELKMTKCVFKFHKFETVDIVGSYALGCAINSKLV 545
           P+   E +LT+        V++P+ +     K  F+F     V +VGSY LG  I   + 
Sbjct: 120 PSVP-ETELTDQAWLPA-GVRVPLHQVPYAVKGCFRFLPPAQVTVVGSYLLGTCIRPDIN 177

Query: 546 VDLQITVPSQTYTKNDSINYRYHKKTCSLLS 638
           VD+ +T+P +     D +N RY +K    L+
Sbjct: 178 VDVALTMPREILQDKDGLNQRYFRKRALYLA 208


>AL356218-11|CAI13313.1| 1023|Homo sapiens nucleolar protein family
           6 (RNA-associated) protein.
          Length = 1023

 Score = 72.1 bits (169), Expect = 2e-12
 Identities = 45/151 (29%), Positives = 72/151 (47%)
 Frame = +3

Query: 186 LYRQPTVNELNRLQETETLFNSNLFRXXXXXXXXXXXXXXXXXXRFLQWFKDFKNHLDSI 365
           LY++PT  ELNRL+ETE LF+S+L R                  R   + ++    +  +
Sbjct: 60  LYKEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDRIDAFLREVNQRVVRV 119

Query: 366 PTDDTEYDLTEHTLTKKIKVKLPISEELKMTKCVFKFHKFETVDIVGSYALGCAINSKLV 545
           P+   E +LT+        V++P+ +     K  F+F     V +VGSY LG  I   + 
Sbjct: 120 PSVP-ETELTDQAWLPA-GVRVPLHQVPYAVKGCFRFLPPAQVTVVGSYLLGTCIRPDIN 177

Query: 546 VDLQITVPSQTYTKNDSINYRYHKKTCSLLS 638
           VD+ +T+P +     D +N RY +K    L+
Sbjct: 178 VDVALTMPREILQDKDGLNQRYFRKRALYLA 208


>AF361081-1|AAL74405.1|  699|Homo sapiens nucleolar RNA-associated
           protein gamma protein.
          Length = 699

 Score = 72.1 bits (169), Expect = 2e-12
 Identities = 45/151 (29%), Positives = 72/151 (47%)
 Frame = +3

Query: 186 LYRQPTVNELNRLQETETLFNSNLFRXXXXXXXXXXXXXXXXXXRFLQWFKDFKNHLDSI 365
           LY++PT  ELNRL+ETE LF+S+L R                  R   + ++    +  +
Sbjct: 60  LYKEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDRIDAFLREVNQRVVRV 119

Query: 366 PTDDTEYDLTEHTLTKKIKVKLPISEELKMTKCVFKFHKFETVDIVGSYALGCAINSKLV 545
           P+   E +LT+        V++P+ +     K  F+F     V +VGSY LG  I   + 
Sbjct: 120 PSVP-ETELTDQAWLPA-GVRVPLHQVPYAVKGCFRFLPPAQVTVVGSYLLGTCIRPDIN 177

Query: 546 VDLQITVPSQTYTKNDSINYRYHKKTCSLLS 638
           VD+ +T+P +     D +N RY +K    L+
Sbjct: 178 VDVALTMPREILQDKDGLNQRYFRKRALYLA 208


>AF361080-1|AAL74404.1| 1007|Homo sapiens nucleolar RNA-associated
           protein beta protein.
          Length = 1007

 Score = 72.1 bits (169), Expect = 2e-12
 Identities = 45/151 (29%), Positives = 72/151 (47%)
 Frame = +3

Query: 186 LYRQPTVNELNRLQETETLFNSNLFRXXXXXXXXXXXXXXXXXXRFLQWFKDFKNHLDSI 365
           LY++PT  ELNRL+ETE LF+S+L R                  R   + ++    +  +
Sbjct: 60  LYKEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDRIDAFLREVNQRVVRV 119

Query: 366 PTDDTEYDLTEHTLTKKIKVKLPISEELKMTKCVFKFHKFETVDIVGSYALGCAINSKLV 545
           P+   E +LT+        V++P+ +     K  F+F     V +VGSY LG  I   + 
Sbjct: 120 PSVP-ETELTDQAWLPA-GVRVPLHQVPYAVKGCFRFLPPAQVTVVGSYLLGTCIRPDIN 177

Query: 546 VDLQITVPSQTYTKNDSINYRYHKKTCSLLS 638
           VD+ +T+P +     D +N RY +K    L+
Sbjct: 178 VDVALTMPREILQDKDGLNQRYFRKRALYLA 208


>AF361079-1|AAL74403.1| 1146|Homo sapiens nucleolar RNA-associated
           protein alpha protein.
          Length = 1146

 Score = 72.1 bits (169), Expect = 2e-12
 Identities = 45/151 (29%), Positives = 72/151 (47%)
 Frame = +3

Query: 186 LYRQPTVNELNRLQETETLFNSNLFRXXXXXXXXXXXXXXXXXXRFLQWFKDFKNHLDSI 365
           LY++PT  ELNRL+ETE LF+S+L R                  R   + ++    +  +
Sbjct: 60  LYKEPTNEELNRLRETEILFHSSLLRLQVEELLKEVRLSEKKKDRIDAFLREVNQRVVRV 119

Query: 366 PTDDTEYDLTEHTLTKKIKVKLPISEELKMTKCVFKFHKFETVDIVGSYALGCAINSKLV 545
           P+   E +LT+        V++P+ +     K  F+F     V +VGSY LG  I   + 
Sbjct: 120 PSVP-ETELTDQAWLPA-GVRVPLHQVPYAVKGCFRFLPPAQVTVVGSYLLGTCIRPDIN 177

Query: 546 VDLQITVPSQTYTKNDSINYRYHKKTCSLLS 638
           VD+ +T+P +     D +N RY +K    L+
Sbjct: 178 VDVALTMPREILQDKDGLNQRYFRKRALYLA 208


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,773,650
Number of Sequences: 237096
Number of extensions: 1172829
Number of successful extensions: 5746
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5739
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)