Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25f05
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.0  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   4.0  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   6.9  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   6.9  

>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 348 ICKFMLK-CYKVQPKDTKADLKRCLK--EKSIYKVDYKDNVSYRNAAKWRKKSKNNN 509
           IC+ M K C +V P+       RCLK  ++ I+K   +     +N  KWRK  +NN+
Sbjct: 23  ICRSMRKKCDEVHPQ-----CGRCLKAGKQCIWK---QPGTERKNKTKWRKAMQNNS 71


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 420  KEKSIYKVDYKDNVSYRNAAKWRKKSKNNNDVLSEF 527
            K+  IY  D+K  VS   + +W K    N D LS +
Sbjct: 1627 KDSIIYDSDFKTLVSEEGSFQWVKLQPTNFDSLSNW 1662


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 345 RICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDY 449
           ++  FM   Y    K+T  + K+  KE+++  +DY
Sbjct: 134 QLMDFMKGFYVTYTKETAREFKKAFKERNLESMDY 168


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 393 TKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRKK 494
           T ++L RC KE    K+ + D++S +   + RK+
Sbjct: 334 THSELLRCYKELVTPKISHVDSISIKAQEEERKR 367


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +3

Query: 351 CKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNA----AKWRK 491
           C F+  C K  PKD +A  +   K K I K  Y  N S +      AKW++
Sbjct: 232 CDFVSNCLKKNPKD-RATAEYLSKHKFIKK--YCPNTSVKEVVASYAKWKE 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,044
Number of Sequences: 5004
Number of extensions: 41396
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)