Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25f05
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0440 + 29401405-29401407,29401721-29401920,29402406-294024...    29   4.1  
04_01_0550 - 7115728-7116065,7116793-7117843                           28   7.1  
11_01_0464 + 3597568-3600244,3600345-3600742                           27   9.4  
07_03_0482 + 18589573-18589728,18589889-18590065,18590518-185906...    27   9.4  

>01_06_0440 +
           29401405-29401407,29401721-29401920,29402406-29402490,
           29403038-29403121,29403853-29404147,29404228-29404322,
           29406118-29406858
          Length = 500

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +3

Query: 276 KYKNQILAAIDHLRARKSRPDANRICKFMLKCYKVQPKDTK---ADLKRCLKEKSIYKVD 446
           KY + ++ A+  +    +  D + IC ++ + ++VQ    +   A L+R +  K I K+D
Sbjct: 68  KYSSMVIEALCEI-GDPNGSDVDAICHYIEQRHEVQANFRRLLTAKLRRLIAAKKIEKID 126

Query: 447 YKDNVSYRNAAKWRKKSKN 503
               ++   AAK  + +K+
Sbjct: 127 RSYRITESYAAKVSQANKS 145


>04_01_0550 - 7115728-7116065,7116793-7117843
          Length = 462

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 390 DTKADLKRCLKEKSIYKV-DYKDNVSY-RNAAKWRKKSK 500
           D K  + +   E SI KV D K  V Y RNAAKW +K+K
Sbjct: 401 DEKGSVTKEEVEISIKKVMDGKRAVEYKRNAAKWMQKAK 439


>11_01_0464 + 3597568-3600244,3600345-3600742
          Length = 1024

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -1

Query: 358 NLQILFASGRDFLARK*SIAANI*FLYFISDISEKNHTGGESNRISKL 215
           NLQ     G  F  +  S   N   LY I D+S  N +GG ++ I KL
Sbjct: 265 NLQAFELGGNHFNGKIPSSITNASNLYLI-DVSNNNFSGGLASSIGKL 311


>07_03_0482 +
           18589573-18589728,18589889-18590065,18590518-18590688,
           18590913-18591029,18591614-18591742,18592210-18592311,
           18592412-18592498,18592585-18592638,18594880-18595016,
           18595181-18595235,18596133-18596188,18596275-18596334,
           18596442-18596529,18596634-18597371,18597451-18597511,
           18598301-18598403,18599180-18599311,18599393-18599477
          Length = 835

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 146 MQQYLIIDCR*KSQLYVSIKFNTQLGYTVRFAAGMIFLRNVR 271
           M Q L++       LY+ + F + L + +RF AG+ +L +++
Sbjct: 166 MLQLLMVFRVASHDLYIKVPFGSSLVHQLRFEAGVKYLNSIK 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,395,824
Number of Sequences: 37544
Number of extensions: 235996
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)