Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25f05
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z70780-5|CAD91633.1|  779|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z70757-6|CAA94802.1|  277|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical
          protein C07G1.2 protein.
          Length = 635

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 81 LHTLIFFGYYF-YLFNCKYCIPVRNFD 4
          + T++FFG +F ++F C  CI ++ F+
Sbjct: 1  MRTILFFGIFFIFIFQCAKCIELKIFE 27


>Z70780-5|CAD91633.1|  779|Caenorhabditis elegans Hypothetical
           protein F46B6.5c protein.
          Length = 779

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 563 RPLVLCGDDLHEEFAEDVIVVF 498
           RP+V+  D LH+   ED+I +F
Sbjct: 74  RPIVVLNDRLHDHTLEDIITIF 95


>Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical
           protein F46B6.5b protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 563 RPLVLCGDDLHEEFAEDVIVVF 498
           RP+V+  D LH+   ED+I +F
Sbjct: 74  RPIVVLNDRLHDHTLEDIITIF 95


>Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical
           protein F46B6.5a protein.
          Length = 828

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 563 RPLVLCGDDLHEEFAEDVIVVF 498
           RP+V+  D LH+   ED+I +F
Sbjct: 74  RPIVVLNDRLHDHTLEDIITIF 95


>Z70757-6|CAA94802.1|  277|Caenorhabditis elegans Hypothetical
           protein ZK287.6 protein.
          Length = 277

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = +3

Query: 303 IDHLRARKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKD 455
           I H+++   RPD    C  ++   K      K   ++C  E+   ++ Y D
Sbjct: 224 IKHIKSHHERPDGTIDCDMVIDYRKNLGNKLKEITEKCFPERKKKRIGYTD 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,373,966
Number of Sequences: 27780
Number of extensions: 237173
Number of successful extensions: 643
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)