Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25f05
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                26   0.27 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.7  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   5.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.6  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 354 KFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRN-AAKWRKKSKNNNDVLSEFF 530
           K   K Y++ P+  K D +  L  ++  K  YK+N+  +N  + +   + N   +L + F
Sbjct: 6   KLANKFYRISPQILKNDKRIYLSPRTPIKNVYKNNIETKNQLSPFNIDTPNRQKILKDGF 65


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/66 (21%), Positives = 28/66 (42%)
 Frame = +3

Query: 315 RARKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRKK 494
           R R    D NR  +   + Y+    + +  L+     K   +   ++  SY+N  ++RK 
Sbjct: 222 RERSCSRDRNREYRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNEREYRKY 281

Query: 495 SKNNND 512
            K + +
Sbjct: 282 GKTSKE 287


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 15/66 (22%), Positives = 27/66 (40%)
 Frame = +3

Query: 315 RARKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRKK 494
           R R    D NR  K   + Y+    + K  L+     K   +   ++  SY+N   +RK 
Sbjct: 233 RERSCSRDRNREYKKKDRRYEKLHNEKKKLLEERTSRKRYSRSREREQKSYKNENSYRKY 292

Query: 495 SKNNND 512
            + + +
Sbjct: 293 RETSKE 298


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 395 CVLWLYFIALQHKFTNSVRI 336
           CV+WL F+ L     N+V +
Sbjct: 858 CVIWLAFVPLYFGTGNNVAL 877


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 465 SSHYLYNLLYIYFS 424
           S HYL  LLYI F+
Sbjct: 46  SLHYLLALLYILFT 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,837
Number of Sequences: 438
Number of extensions: 3281
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)