Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25f02
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313...    29   2.2  
12_02_0189 + 15165485-15168694                                         28   6.7  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     28   6.7  

>08_01_0356 +
           3131214-3132443,3132584-3132778,3132892-3132972,
           3133324-3133383,3133466-3133560,3133660-3133816,
           3133896-3134021,3134398-3134478,3134557-3134647,
           3134735-3134868,3135068-3135136,3135219-3135308,
           3135405-3135508,3135594-3135762,3136066-3136134
          Length = 916

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +2

Query: 269 RFPHIDNNSNMA-TKRFFSGESSGEPLIKRMAMANSPKKIRENYKRINGKLMGKMTLSID 445
           R P  D+N N+  ++R   GESS      +  +  SP  ++++ K++  K+  K T+  +
Sbjct: 297 REPKADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMKMKMKTKKTMK-N 355

Query: 446 NEYYYTFRI 472
           +++  T ++
Sbjct: 356 SQFSKTMKV 364


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 253  LNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFENFD 113
            LNG  ++      +L+WR+++  V NN   D   R  F   D  + D
Sbjct: 913  LNGCNLKYYESKLNLSWRKVLKEVMNNKESDENNRWEFLNPDASDSD 959


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 104  CIVVEIFKIGFLKHCSKRVVKRCVVGHIYNQFPP 205
            C   EI +  +L H SK  +  C   H++N  PP
Sbjct: 1022 CQKFEIERKSWLSHLSKLTIHDCPHLHVHNPLPP 1055


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,899,329
Number of Sequences: 37544
Number of extensions: 300032
Number of successful extensions: 776
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)