Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25f02
         (611 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119159-1|AAM51019.1|  283|Drosophila melanogaster RH08414p pro...    29   6.5  
AE014298-839|AAF46118.3|  282|Drosophila melanogaster CG4690-PA ...    29   6.5  
AY113352-1|AAM29357.1|  187|Drosophila melanogaster GH28351p pro...    28   8.6  
AE014297-440|AAF54137.1|  187|Drosophila melanogaster CG10298-PA...    28   8.6  

>AY119159-1|AAM51019.1|  283|Drosophila melanogaster RH08414p
           protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -1

Query: 506 RRSIPESCCRTLF 468
           RR +PESCCRTL+
Sbjct: 171 RRWVPESCCRTLY 183


>AE014298-839|AAF46118.3|  282|Drosophila melanogaster CG4690-PA
           protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -1

Query: 506 RRSIPESCCRTLF 468
           RR +PESCCRTL+
Sbjct: 170 RRWVPESCCRTLY 182


>AY113352-1|AAM29357.1|  187|Drosophila melanogaster GH28351p
           protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 284 DNNSNMATKRFFSGESSGEPLIKRMAMANSPKKIRENYKRINGK 415
           D  +N +T +F S    G+P+      A     + + YK+++GK
Sbjct: 143 DKRANFSTSKFMSKYKLGDPIAGNFFQAQWDDYVPKLYKQLSGK 186


>AE014297-440|AAF54137.1|  187|Drosophila melanogaster CG10298-PA
           protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 284 DNNSNMATKRFFSGESSGEPLIKRMAMANSPKKIRENYKRINGK 415
           D  +N +T +F S    G+P+      A     + + YK+++GK
Sbjct: 143 DKRANFSTSKFMSKYKLGDPIAGNFFQAQWDDYVPKLYKQLSGK 186


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,922,345
Number of Sequences: 53049
Number of extensions: 557250
Number of successful extensions: 1612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)