Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25f02
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical pr...    31   0.65 
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF024494-10|AAB70336.1|  642|Caenorhabditis elegans Hypothetical...    28   4.6  
AL110490-1|CAB54439.1|  674|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF016427-11|AAB65354.2|  108|Caenorhabditis elegans Hypothetical...    28   6.0  

>Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical
           protein F32B4.6 protein.
          Length = 297

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +2

Query: 269 RFPHIDNNSNM--ATKRFFSGESSGEPLIKRMAMANSPKKIRENYKRINGKLMGKMTLSI 442
           RFPH D+ S+M  A   F +  S G PLI    +  + +   +  K ++ +L G M  ++
Sbjct: 11  RFPHSDSTSSMMLANLTFGNMRSKGTPLILVPGLFGTKENWIQVGKDLSQRL-GCMVFAV 69

Query: 443 DNEYYYTFRIMSDNKIQEYYGDSQSFKD 526
           +N  + +F   +    +E   D   F D
Sbjct: 70  ENRNHGSFSKAASMTYEEMADDLVGFID 97


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 437 SIDNEYYYTFRIMSDNKIQEYYGDSQSFKDMEEGKCYDISLNYVK 571
           S D +  Y   I + N IQ +Y    SFK+  + K + + + Y+K
Sbjct: 292 SFDEKLKYIVGINNFNMIQNFYSHPCSFKNFAQEKDFLLGIGYLK 336


>AF025472-4|AAB71071.1|  209|Caenorhabditis elegans Hypothetical
           protein ZK250.2 protein.
          Length = 209

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 180 PTTHRLTTRLEQCFKKPILKISTTIHRLC 94
           PTTH  T   E+    P++++ST   ++C
Sbjct: 54  PTTHAETGMTEEMMTTPVVEVSTVTEKVC 82


>AF024494-10|AAB70336.1|  642|Caenorhabditis elegans Hypothetical
           protein C38C3.7 protein.
          Length = 642

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
 Frame = -2

Query: 205 WRELIINVANNTPLDNTFRTMFQKADFENFDYNTPIVYNLKTKT-LTMYNERI--RAALN 35
           W  +I+++ N+ P      T+F++  FE+ +     +++++  T  T+ N +I  R AL+
Sbjct: 311 WISIIVSIDNSEPPSPQKFTVFKRMGFEDCETVEDFIWHVENSTKKTVKNAKIERRLALH 370

Query: 34  RPAR-FND 14
           + +R F D
Sbjct: 371 KVSRKFKD 378


>AL110490-1|CAB54439.1|  674|Caenorhabditis elegans Hypothetical
           protein Y48B6A.1 protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 476 SDNKIQEYYGDSQSFKDMEEGKCYDISLNYVKTKFSQMIQINEY 607
           S N  +EY  D +  K  EE +  D  LN++ +K+  + ++ +Y
Sbjct: 244 SYNPPEEYIFDDEERKKWEEAEKEDRVLNFMPSKYDALRKVPQY 287


>AF016427-11|AAB65354.2|  108|Caenorhabditis elegans Hypothetical
           protein F32D1.8 protein.
          Length = 108

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +2

Query: 302 ATKRFFSGESSGEPLIKRMAMANSPKKIRENYKRINGKLMGKMTLSIDNEYYYTFRIMSD 481
           A++ F   E S EP++K         +  E+Y RI  +L+ ++   I      T    SD
Sbjct: 31  ASEYFSVSEISEEPMLKEPFDEQHDDEYWEHYARIRQELLSRVLFPIRRG--KTLEEQSD 88

Query: 482 NKIQEYYGDSQSF 520
           +  +E+  DS  F
Sbjct: 89  SDEEEWSDDSWEF 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,650,208
Number of Sequences: 27780
Number of extensions: 303275
Number of successful extensions: 910
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)