Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25f01
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 30 0.14
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 1.3
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 27 1.3
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.3
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 3.1
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 25 3.1
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 3.1
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf... 25 4.1
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 4.1
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 25 5.4
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 25 5.4
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 5.4
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 5.4
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 25 5.4
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 24 7.1
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr... 24 7.1
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom... 24 7.1
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.4
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 39.9 bits (89), Expect = 1e-04
Identities = 15/46 (32%), Positives = 31/46 (67%)
Frame = -2
Query: 216 QEIAENIVKPCFEQFGTILHIYVCPLNHNRIIVEYANSESVQKAMT 79
QE+ +++ + C E++G ++HI V P +I V++ N++ +KA+T
Sbjct: 527 QELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAIT 572
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 29.9 bits (64), Expect = 0.14
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -2
Query: 234 EQKMTKQEIAENIVKPCFEQFGTILHIYVCPLNHNRIIVEYANSESVQKAMTVNDDDARF 55
E Q + + I++ FEQ LH+ L + V +ANS+S + + D+A
Sbjct: 108 EPSWNPQSVRQQIMEAAFEQ----LHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASV 163
Query: 54 T 52
T
Sbjct: 164 T 164
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 1.3
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 195 VKPCFEQFGTILHIYVCP--LNHNRIIVEYANSESVQKAMT 79
VK F+Q+G +LH+ V L V++ N++ KA++
Sbjct: 99 VKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALS 139
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.6 bits (56), Expect = 1.3
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -2
Query: 342 QKLYNREIKQKTKTIIVKRPTTMNRIQ-IDWKPHSEDEQKMTKQE 211
Q+L + E ++K K ++ K RI+ I+ + H E+EQ+ KQE
Sbjct: 128 QRLKDEEERRK-KELMEKEKKEKERIRLIEEQKHKENEQRRLKQE 171
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 26.6 bits (56), Expect = 1.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 199 HCKALF*TIWHHITHIRMSFKSQPNYC 119
H + LF T H +T++ SFK+ YC
Sbjct: 853 HSRTLFATHAHQLTNLTKSFKNVECYC 879
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 216 QEIAENIVKPCFEQFGTILHIYVCPLNHNR 127
++I EN P FE +LH+ + LN NR
Sbjct: 12 RKIQENQKHPSFEGSNKVLHLALSYLNTNR 41
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 3.1
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -2
Query: 345 VQKLYNREIKQKTKTIIVKRPTTMNRIQIDWKPHSEDEQKMTKQEIAENIVKP 187
V +L E++ K +K P +N + W P+ +EQ ++ + ENI+ P
Sbjct: 340 VLQLKRDELENVYKAWNIKHPQRVNPKLLRWTPYLGEEQ-ISNLLLKENILIP 391
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 141 LNHNRIIVEYANSESVQKAMTVN-DDDARF 55
LNH VEY + + +K++ +N +D+ RF
Sbjct: 311 LNHEAQNVEYLGNNAAEKSLQMNLEDEQRF 340
>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
protein |Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 194 TMFSAISCLVIFCSSSEW 247
T AI+CL IF S+S W
Sbjct: 5 TFIYAITCLPIFISASSW 22
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 4.1
Identities = 7/28 (25%), Positives = 19/28 (67%)
Frame = -2
Query: 147 CPLNHNRIIVEYANSESVQKAMTVNDDD 64
CPL+H+++++E+ +++ +A + D
Sbjct: 420 CPLSHSKLLLEHRPFQTLAEACIIKHPD 447
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 24.6 bits (51), Expect = 5.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 207 AENIVKPCFEQFGTILHIYVCPLNHN 130
A N+V F+ G L +C LNH+
Sbjct: 170 AMNLVTSSFDSLGMCLDTILCRLNHS 195
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 24.6 bits (51), Expect = 5.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 266 ILFIVVGRFTIIVLVFCLIS 325
ILFI + +IVL+ CL+S
Sbjct: 23 ILFIFIALAAVIVLLICLLS 42
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 5.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 294 VKRPTTMNRIQIDWKPHSEDEQKMTKQEIAENIVKP 187
+K+P +N I++ W+ E Q + Q I + +KP
Sbjct: 410 MKKPINLNFIRMYWEQMLEAVQVVHDQNIVHSDLKP 445
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 24.6 bits (51), Expect = 5.4
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -2
Query: 213 EIAENIVKPCFEQFGTILHIYVCPLNHNRI 124
+I+ N +K E FG ++++ V ++ NR+
Sbjct: 104 DISRNKIKQLPESFGALMNLKVLSISKNRL 133
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 24.6 bits (51), Expect = 5.4
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -2
Query: 354 FDRVQKLYNREIKQKT-KTIIVKRPTTMNRIQIDWKPHSEDEQKMTKQEIAENIVKPCFE 178
F+ +Q ++ Q+T K + +PT R ++ P S DE+ + +QE+ + +++ C E
Sbjct: 398 FNFIQIDHDPITNQETRKPVKFSKPTKDIRSRLKEVPTSTDEEFIIRQELMD-LLEKCLE 456
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 24.2 bits (50), Expect = 7.1
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 271 QNSNRLETPFRRRTKND*TRDCRKHCKALF*TIWHHIT 158
Q+ L T R+ T D T RKH ++ W H T
Sbjct: 2 QSDASLMTSVRKATSIDETAPKRKHVRSCIIFTWDHHT 39
>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 24.2 bits (50), Expect = 7.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -2
Query: 204 ENIVKPCFEQFGTILHIYVCPLNHNRIIVEYANSESVQKAMTVNDD 67
+N+ +P +F ++ +N N I+EY +E V K + DD
Sbjct: 86 DNLPEPILPKFSGKFPLHPNNVNVNSEILEYYINEIVPKISSPGDD 131
>SPBC428.13c |mob1||protein kinase regulator
Mob1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 24.2 bits (50), Expect = 7.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 187 RLYNVFGNLLFSHFLFVFGMGFPIYLNS 270
RL+ ++ ++ SHF + M YLN+
Sbjct: 152 RLFRIYAHIYCSHFHVMVAMELESYLNT 179
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 23.8 bits (49), Expect = 9.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 38 ENSVTVNRASSSFTVMAFCTDSEFAYSTIIRL*FKGHTYMC 160
EN + V+ A+S T+ F+YST+++ F G + C
Sbjct: 518 ENELQVSCAASG-TLNYLIRHRLFSYSTLVQKGFSGSVFDC 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,858
Number of Sequences: 5004
Number of extensions: 25882
Number of successful extensions: 93
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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