Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25f01
(385 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42438-1|AAN84876.1| 459|Caenorhabditis elegans Maternal effect... 31 0.28
AF016224-1|AAC27121.1| 459|Caenorhabditis elegans WD-40 repeat ... 31 0.28
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr... 30 0.64
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr... 30 0.64
U28736-2|AAA68307.1| 620|Caenorhabditis elegans Hypothetical pr... 30 0.64
AF025463-2|AAB71006.1| 387|Caenorhabditis elegans Serpentine re... 29 1.5
U46671-6|AAA85751.2| 133|Caenorhabditis elegans Hypothetical pr... 28 2.6
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 28 2.6
Z73896-4|CAA98057.2| 503|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p... 27 4.5
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr... 27 4.5
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein. 27 4.5
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF125463-3|AAD12860.1| 163|Caenorhabditis elegans Hypothetical ... 27 6.0
Z77665-9|CAB01223.2| 729|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr... 26 7.9
U64835-7|AAG24198.2| 427|Caenorhabditis elegans Hypothetical pr... 26 7.9
AF016656-4|AAB66039.3| 429|Caenorhabditis elegans Hypothetical ... 26 7.9
>U42438-1|AAN84876.1| 459|Caenorhabditis elegans Maternal effect
sterile protein 6 protein.
Length = 459
Score = 31.1 bits (67), Expect = 0.28
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = -2
Query: 171 GTILHIYVCPLNHNRIIVEYANSESVQKAMTVNDDDARFTVT 46
G+ LH+Y P++ N I ++++ + K+ V +++ FTVT
Sbjct: 63 GSFLHMYSVPIDINNIELQWSCNFPTDKSSKVEREESLFTVT 104
>AF016224-1|AAC27121.1| 459|Caenorhabditis elegans WD-40 repeat
protein protein.
Length = 459
Score = 31.1 bits (67), Expect = 0.28
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = -2
Query: 171 GTILHIYVCPLNHNRIIVEYANSESVQKAMTVNDDDARFTVT 46
G+ LH+Y P++ N I ++++ + K+ V +++ FTVT
Sbjct: 63 GSFLHMYSVPIDINNIELQWSCNFPTDKSSKVEREESLFTVT 104
>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 29.9 bits (64), Expect = 0.64
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -2
Query: 375 VVSYQFIFDRVQKLYNREIKQKTKTIIVKRPTTMNRIQIDWKPHSEDEQKMTKQEIAENI 196
+V FI R + +Y ++KQK +TI RP IQ + S ++ M K ++ I
Sbjct: 1645 IVRTDFIICRDRNIYLAKLKQKVQTICAPRPVLTMPIQ---RMPSSNDLVMKKLQVKNAI 1701
Query: 195 VKPCFEQFGT 166
FG+
Sbjct: 1702 SNLDLRSFGS 1711
>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 29.9 bits (64), Expect = 0.64
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -2
Query: 375 VVSYQFIFDRVQKLYNREIKQKTKTIIVKRPTTMNRIQIDWKPHSEDEQKMTKQEIAENI 196
+V FI R + +Y ++KQK +TI RP IQ + S ++ M K ++ I
Sbjct: 1645 IVRTDFIICRDRNIYLAKLKQKVQTICAPRPVLTMPIQ---RMPSSNDLVMKKLQVKNAI 1701
Query: 195 VKPCFEQFGT 166
FG+
Sbjct: 1702 SNLDLRSFGS 1711
>U28736-2|AAA68307.1| 620|Caenorhabditis elegans Hypothetical
protein F26A10.2 protein.
Length = 620
Score = 29.9 bits (64), Expect = 0.64
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = -1
Query: 202 KHCKALF*TIWHHITHIRMSFKSQPNYCRVC----KLRVSTKSHDCKRRRRS 59
K C LF ++W+ H +P C+ C K R + H C R++S
Sbjct: 51 KDCGKLFNSVWYLKQHAVKHSNDRPFKCKFCFKTYKFRSNLYQHKCPERQKS 102
>AF025463-2|AAB71006.1| 387|Caenorhabditis elegans Serpentine
receptor, class t protein54 protein.
Length = 387
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 257 SI*ILFIVVGRFTIIVLVFCLISRLYNFCT 346
+I ++F+V G +++ +FC I+ +Y CT
Sbjct: 41 TIGVIFLVYGILLVVLNIFCSIAIIYTKCT 70
>U46671-6|AAA85751.2| 133|Caenorhabditis elegans Hypothetical
protein C14E2.1 protein.
Length = 133
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -2
Query: 360 FIFDRVQKLYNREIKQKTKTIIVKRPT-TMNRIQIDWKPHSEDEQKMTKQEIAENIVKPC 184
FIF + + N +KQ I K T T ++ + +SED Q++ + ++ K C
Sbjct: 65 FIFVESEYMLNENMKQGMPVIWEKSITSTEYPVEDESSDNSEDTQEILLPSVGDSPTKTC 124
Query: 183 FEQFGTIL 160
+F +L
Sbjct: 125 CCEFSRLL 132
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 324 EIKQKTKTIIVKRPTTMNRIQIDWKPHSEDEQKMTKQE 211
++K + T++ K TMN I+ W P + E++M + E
Sbjct: 161 QLKVEYDTMMEKLNQTMNSIKTFWSPELKRERQMRRDE 198
>Z73896-4|CAA98057.2| 503|Caenorhabditis elegans Hypothetical
protein F09E8.6 protein.
Length = 503
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -1
Query: 235 RTKND*TRDCRKHCKALF*TIWHHITHIRMSFKSQPNYCR----VCKLRVST 92
R++N D HC +W + H + S K +YCR +C++ V+T
Sbjct: 374 RSRNKKCEDLNAHCG-----MWEQLGHCQHSVKYMAHYCRKACNLCEVEVTT 420
>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical
protein T04A8.14 protein.
Length = 1521
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 261 IDWKPHSEDEQKMTKQEIAENIVKPCFEQFGTILH 157
++WK H ++ M E AE V P F +L+
Sbjct: 522 LNWKKHDIEQDPMLPLEAAEEYVCPAFSDSDMVLN 556
>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
protein T04A8.14 protein.
Length = 1521
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 261 IDWKPHSEDEQKMTKQEIAENIVKPCFEQFGTILH 157
++WK H ++ M E AE V P F +L+
Sbjct: 522 LNWKKHDIEQDPMLPLEAAEEYVCPAFSDSDMVLN 556
>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
T05A12.4a protein.
Length = 1622
Score = 27.1 bits (57), Expect = 4.5
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -2
Query: 204 ENIVKPCFEQFGTILHIY-VCPLNHNRIIVEYANSESVQKAMT-VNDDD 64
+ I+ P FEQ G +LH Y + L I+ + Q+ +T +N D
Sbjct: 1235 KRIITPFFEQIGDVLHAYRLIALTLAEIVDRFDELSQAQRRITDINVSD 1283
>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
Length = 1521
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 261 IDWKPHSEDEQKMTKQEIAENIVKPCFEQFGTILH 157
++WK H ++ M E AE V P F +L+
Sbjct: 522 LNWKKHDIEQDPMLPLEAAEEYVCPAFSDSDMVLN 556
>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical
protein R09E10.7 protein.
Length = 1717
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 199 HCKALF*TIWHHITHIRMSFKSQPNYCR 116
HC + T HH THI + +P CR
Sbjct: 368 HCDIQYLTATHHPTHIEWTTMIKPLRCR 395
>AF125463-3|AAD12860.1| 163|Caenorhabditis elegans Hypothetical
protein Y49F6C.8 protein.
Length = 163
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -2
Query: 300 IIVKRPTTMNRIQIDWKPHSEDEQKMTKQEIAE 202
+ +K+P T N +Q + H E++Q+ +Q I +
Sbjct: 30 LTIKQPVTQNSLQRYQEEHREEKQQYLRQAILD 62
>Z77665-9|CAB01223.2| 729|Caenorhabditis elegans Hypothetical
protein K02E11.1 protein.
Length = 729
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 145 SFKSQPNYCRVCKLRVSTKSHDCKRRRRSIYSYR 44
S K + C+ CK ++TKS +R RS S R
Sbjct: 3 STKDRQALCKKCKKGIATKSSRASKRLRSSKSTR 36
>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
protein C08B11.3 protein.
Length = 1244
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 147 CPLNHNRIIVEYANSESVQKAMTVNDDD-ARFT 52
CP+++NR++ EY + + ++ +N+ D AR T
Sbjct: 145 CPISNNRMVQEYQHRD--ERGQIINEPDYARLT 175
>U64835-7|AAG24198.2| 427|Caenorhabditis elegans Hypothetical
protein T09D3.4 protein.
Length = 427
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -2
Query: 357 IFDRVQKLYNREIKQKTKTIIVKRPTTMNRIQIDWKPHSEDEQKMTKQEIAENIVKPCF 181
+FDR+++ K+I K+ T + +DWK + + E A N VK F
Sbjct: 250 VFDRLERAQMSVKIFGEKSITEKKTTLSSYCAVDWKNVKINPETAINTEQANNYVKAEF 308
>AF016656-4|AAB66039.3| 429|Caenorhabditis elegans Hypothetical
protein C35A11.1 protein.
Length = 429
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 173 NCSKQGFTMFSAISCLVIFCSSSEWGFQSI*ILFIVVGRFTIIVLVFCLISRL 331
N S+ +T + + + C +W I ILF ++ +I L F L+S++
Sbjct: 200 NYSEPVYTFMVSHAATINNCRLFKWNIWMIGILFKIIPCILLIFLSFGLVSKI 252
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,060,104
Number of Sequences: 27780
Number of extensions: 151129
Number of successful extensions: 610
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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