Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25e22
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical pr...   180   6e-46
Z92831-4|CAJ58497.1|  447|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.     30   1.6  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    29   2.8  
Z83246-2|CAB05841.1|  292|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81096-6|CAJ80827.1|  691|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81096-4|CAB54264.2|  689|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z81096-3|CAB54265.2|  747|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z78065-10|CAJ80826.1|  691|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z78065-7|CAB54297.2|  689|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z78065-6|CAB54298.2|  747|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF099922-6|AAK21408.1|  115|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF099920-5|AAK29843.2|  361|Caenorhabditis elegans Serpentine re...    27   8.5  

>L14331-4|AAA28097.1|  352|Caenorhabditis elegans Hypothetical
           protein K12H4.3 protein.
          Length = 352

 Score =  180 bits (439), Expect = 6e-46
 Identities = 80/154 (51%), Positives = 110/154 (71%)
 Frame = +3

Query: 174 PVRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKNLY 353
           P + + +   +   W NR+RVLV   RG + R R+LM+DIK L+PH K +SK+++ K+L 
Sbjct: 45  PKQATEETRKRAELWTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLN 104

Query: 354 VVNEISEMKNCNKCILFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTGNCLRG 533
           V+NEI+EMKNC K + FE RK +D Y+W+SN+  GPS KFLV N++TM ELKM+GNCLR 
Sbjct: 105 VLNEIAEMKNCTKVMYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRA 164

Query: 534 SRPLLSFDPQFTKDPHYCLLKELLVQIFGVPNYH 635
           SRP+LSFD  F K P   L+K +L+Q  G P++H
Sbjct: 165 SRPVLSFDDAFDKKPQLKLIKAVLMQTLGTPHHH 198


>Z92831-4|CAJ58497.1|  447|Caenorhabditis elegans Hypothetical
           protein F22G12.7 protein.
          Length = 447

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/83 (20%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = +3

Query: 177 VRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKNLYV 356
           + +  + A +  K I  +++ +  ++   ++     EDI KL   +  E K+ ++  + +
Sbjct: 163 IELVQNKAGEDSKTIANRQIALSGVKNEFYKLAEASEDISKLQGINCIEDKINKNVAVEI 222

Query: 357 VNEISEMKNCNKCIL--FEGRKM 419
            +EI++ +NC    +  FE  K+
Sbjct: 223 FSEIADARNCMNTFVDSFENEKI 245


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +3

Query: 87  KAMVKVKKPSKVKQRITEPVTKDENVPL-----PPVRMSSDPAPKQVK 215
           KA VK + PS +K    +P  K E  P       PV  S DP+PK+ K
Sbjct: 729 KAPVKPRDPSPMKAVPIKPAPKTEVPPAVVKKPEPVAKSRDPSPKKAK 776


>U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 258 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMW 437
           I   H+ L++DIK+            +S  L +V+    +K C KC++F+G  + D+Y +
Sbjct: 222 ITAHHQELLQDIKR---------NFSKSLLLILVSYCIVLK-CFKCLIFQGTSINDIYHF 271

Query: 438 I 440
           I
Sbjct: 272 I 272


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 258 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCIL 401
           +N +H           P H   ++M+RSK  +V+     +KNC++ +L
Sbjct: 137 VNLQHTLTPSPYASSTPKHTPTNQMDRSKISFVIKPQINLKNCSRELL 184


>Z83246-2|CAB05841.1|  292|Caenorhabditis elegans Hypothetical
           protein ZK795.3 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 28/142 (19%), Positives = 62/142 (43%), Gaps = 2/142 (1%)
 Frame = +3

Query: 207 QVKWINRQ--RVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMK 380
           + +W   Q  ++++   R  + R +   +++K + P+ +  ++        V  + S+ +
Sbjct: 69  EYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVV--QASKAQ 126

Query: 381 NCNKCILFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTGNCLRGSRPLLSFDP 560
           +    I+F   +     M + ++P GP+A F + N+    ++   G  +    P L FD 
Sbjct: 127 DSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPNCGT-MSEQYPHLIFDN 185

Query: 561 QFTKDPHYCLLKELLVQIFGVP 626
             +K  H      +L  +F VP
Sbjct: 186 LNSKLGH--RFTTILKHLFPVP 205


>Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 258 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 389
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 336 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 377


>Z81096-6|CAJ80827.1|  691|Caenorhabditis elegans Hypothetical
           protein T09E8.1f protein.
          Length = 691

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 258 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 389
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 105 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 146


>Z81096-4|CAB54264.2|  689|Caenorhabditis elegans Hypothetical
           protein T09E8.1b protein.
          Length = 689

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 258 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 389
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 103 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 144


>Z81096-3|CAB54265.2|  747|Caenorhabditis elegans Hypothetical
           protein T09E8.1a protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 258 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 389
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 161 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 202


>Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 258 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 389
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 336 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 377


>Z78065-10|CAJ80826.1|  691|Caenorhabditis elegans Hypothetical
           protein T09E8.1f protein.
          Length = 691

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 258 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 389
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 105 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 146


>Z78065-7|CAB54297.2|  689|Caenorhabditis elegans Hypothetical
           protein T09E8.1b protein.
          Length = 689

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 258 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 389
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 103 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 144


>Z78065-6|CAB54298.2|  747|Caenorhabditis elegans Hypothetical
           protein T09E8.1a protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 258 INHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCN 389
           I+HR +H     K L+PHH  +  ++R ++L  +N  S +   N
Sbjct: 161 ISHRQQHHTSYEKDLIPHHNID--VDRRRSLQALNGSSALYQLN 202


>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical
           protein F36G3.1 protein.
          Length = 964

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 96  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLVFAMRGIN 263
           V +K P  +       +   E  P+   R  S P  KQV ++ + R+LV   R I+
Sbjct: 52  VTIKVPDTIAD--ANDLEPGERTPVSTPRAISPPIVKQVMYLQKPRILVMTQREIH 105


>AF099922-6|AAK21408.1|  115|Caenorhabditis elegans Hypothetical
           protein F56F11.1 protein.
          Length = 115

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 414 KMRDLYMWISNIPNGP 461
           KM DLY WISN   GP
Sbjct: 96  KMSDLYRWISNEKRGP 111


>AF099920-5|AAK29843.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein94 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -3

Query: 293 NIFH*MPVTMIDTSHRKDEYPLSVYPFHLFGCRITRHSYWR 171
           ++F+ +   MI+ + +  E PLS+ PFH++   I  + ++R
Sbjct: 88  SVFYNILYLMIEFNVKPCEPPLSLPPFHMYWINIVINDFFR 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,801,882
Number of Sequences: 27780
Number of extensions: 326934
Number of successful extensions: 976
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)