Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25e18
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.6  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    26   3.6  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   6.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   6.3  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   6.3  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   6.3  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    25   8.4  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   8.4  

>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 595 SKRKSSGFHLPLLARYVSSTEFKSSVTT*SLAYTSRANKT 476
           +K KS+ +H P     VSS   +S+ T    AY   A KT
Sbjct: 514 TKSKSAAYHYPATTETVSSKAARSATTP---AYVGGATKT 550


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 324 PNIMMNNNVLVHNFYDKLYAKHCKRMF 404
           P +    N+L   F+D L+ +HC  +F
Sbjct: 273 PTVQQFMNLLKKAFFDHLFGRHCLLLF 299


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/76 (18%), Positives = 34/76 (44%)
 Frame = +3

Query: 174 LNEQLNCVMHKCVPVIFGTRLDKQFRETDDIDANNNINGTFMLDGRFLSFPNIMMNNNVL 353
           L ++   + H+C    +      +  E   ID NN +    ++    +++ +  M+   L
Sbjct: 209 LQKENERMFHECKDDTYTWPSSYRLGEVVWIDINNELIPAIIVARNLINYESNQMDAVKL 268

Query: 354 VHNFYDKLYAKHCKRM 401
           + + + + Y  HCK++
Sbjct: 269 ISDTFVEPYQYHCKQL 284


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 388  CLAYNLS*KLCTKTLLF 338
            C  YN+S K+CTK + F
Sbjct: 1317 CAVYNISTKICTKYIQF 1333


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 42  DFNELYDKIENKYKLKYTFDC 104
           +FNE+++   ++Y LKY+  C
Sbjct: 604 NFNEMHNAYSSRYPLKYSKSC 624


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 42  DFNELYDKIENKYKLKYTFDCATNNNERILFGAIQERKSY 161
           D NE++D  E    L    D  T   +R++    Q  KSY
Sbjct: 518 DLNEIHDLREENEGLTLKIDSITKEKDRLINELEQRIKSY 557


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 19/91 (20%), Positives = 34/91 (37%)
 Frame = +3

Query: 177 NEQLNCVMHKCVPVIFGTRLDKQFRETDDIDANNNINGTFMLDGRFLSFPNIMMNNNVLV 356
           NEQL  V+H C   I   R   +      I    +   T++L+          +N+N+L+
Sbjct: 78  NEQLGSVLHDCHAEILALRCFNRLLLEHCILIKESKKDTWLLE--VADNGKFTLNSNLLI 135

Query: 357 HNFYDKLYAKHCKRMFLYGNVDQEKHINRAI 449
           H +  +          L   ++  K  N  +
Sbjct: 136 HLYVSECPCGDASMELLASRLENNKPWNLTV 166


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 133 KSIRSLLFVAQSKVYFNLYLFSILSYNSL 47
           K   S+LF  +++VYF+  + SIL + +L
Sbjct: 821 KGFGSILFTEENQVYFDPLINSILHFANL 849


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,025
Number of Sequences: 5004
Number of extensions: 48778
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)