Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25e18
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   0.98 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   0.98 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   0.98 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.2  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 339 NNNVLVHNFYDKLYAKHCKRMFLYGNVDQEKHINRAIQLVY 461
           NNN   +N+ +  Y  +CK+  LY N++  + I   + + Y
Sbjct: 92  NNNNYKYNYNNNNYNNNCKK--LYYNINYIEQIPIPVPVYY 130


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 339 NNNVLVHNFYDKLYAKHCKRMFLYGNVDQEKHINRAIQLVY 461
           NNN   +N+ +  Y  +CK+  LY N++  + I   + + Y
Sbjct: 92  NNNNYKYNYNNNNYNNNCKK--LYYNINYIEQIPIPVPVYY 130


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 339 NNNVLVHNFYDKLYAKHCKRMFLYGNVDQEKHINRAIQLVY 461
           NNN   +N+ +  Y  +CK+  LY N++  + I   + + Y
Sbjct: 92  NNNNYKYNYNNNNYNNNCKK--LYYNINYIEQIPIPVPVYY 130


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 339 NNNVLVHNFYDKLYAKHCKRMFLYGNVDQEKHI 437
           NNN   +N+ +  Y  +CK+  LY N++  + I
Sbjct: 92  NNNNYKYNYNNNNYNNNCKK--LYYNINYIEQI 122


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 339 NNNVLVHNFYDKLYAKHCKRMF 404
           NNN   +N Y+  Y  +CK+++
Sbjct: 334 NNNNYNNNNYNNNYNNNCKKLY 355


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 326 QHNDEQQRFGAQFLRQVIRQTL 391
           +HN     FGA  LRQ++++ L
Sbjct: 59  RHNVHSLAFGAIQLRQLLKRQL 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,665
Number of Sequences: 438
Number of extensions: 3336
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)